Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 2e-12 seq12 87.8 2e-12 seq9 87.8 2e-12 >seq13 Length=206566 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 122995 TACATGCGGGTGTAGTTCAGTGGTAGAACGCTATCCTTCCAAGTTAGATGTCGTCGGTTC 123054 ||||||||||||||||||| ||||||||| || ||||||||| || || ||| ||||| Sbjct 206421 TACATGCGGGTGTAGTTCAATGGTAGAACTTTAGCCTTCCAAGCTA-ATAGCGTGGGTTC 206363 Query 123055 GAGTCCGATCACCCGCTT 123072 || ||| ||||||||||| Sbjct 206362 GATTCCCATCACCCGCTT 206345 >seq12 Length=207890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 122995 TACATGCGGGTGTAGTTCAGTGGTAGAACGCTATCCTTCCAAGTTAGATGTCGTCGGTTC 123054 ||||||||||||||||||| ||||||||| || ||||||||| || || ||| ||||| Sbjct 19922 TACATGCGGGTGTAGTTCAATGGTAGAACTTTAGCCTTCCAAGCTA-ATAGCGTGGGTTC 19864 Query 123055 GAGTCCGATCACCCGCTT 123072 || ||| ||||||||||| Sbjct 19863 GATTCCCATCACCCGCTT 19846 >seq9 Length=227325 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 122995 TACATGCGGGTGTAGTTCAGTGGTAGAACGCTATCCTTCCAAGTTAGATGTCGTCGGTTC 123054 ||||||||||||||||||| ||||||||| || ||||||||| || || ||| ||||| Sbjct 146 TACATGCGGGTGTAGTTCAATGGTAGAACTTTAGCCTTCCAAGCTA-ATAGCGTGGGTTC 204 Query 123055 GAGTCCGATCACCCGCTT 123072 || ||| ||||||||||| Sbjct 205 GATTCCCATCACCCGCTT 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627932268620800