Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_007021.1 Length=130706 Score E Sequences producing significant alignments: (Bits) Value seq44 170 2e-37 >seq44 Length=71862 Score = 170 bits (188), Expect = 2e-37 Identities = 556/841 (66%), Gaps = 36/841 (4%) Strand=Plus/Plus Query 82254 GTATTATTAGAAAAAGTGGGTTGGGTTAGAACATCTGAACAATTACCTGTAG-GTACTAA 82312 || ||| | |||||| | || ||||| ||| ||||||||| | || | | | || || Sbjct 37334 GTCTTACTCGAAAAAATAGGCTGGGTGGCAACTTCTGAACAACTTCCAGAATCGGAC-AA 37392 Query 82313 GTACTACAATCCTAGAATCACTTTTGATGGTAAATATTGGTATATAAGTGTTTCTATTGA 82372 |||| |||||| || | | ||||| ||||| ||||||||| || || |||||| Sbjct 37393 GTACAGCAATCCGCGAGTATCATTTGACGGTAAGTATTGGTATGTATCCGTAGGTATTGA 37452 Query 82373 AGAAGAA--AATAAATATGAAGAACTAACAAACGAATCTTTAGGTATTGATTTAGGAATA 82430 | |||| || ||| ||||| | |||| | | ||||||||| |||| || Sbjct 37453 -GCAGAAGCAAGAAAGCCCT-GAACTGTCGGACGAGGCGATTGGTATTGATGTAGGTATT 37510 Query 82431 AAAGAATTAGCCGTATGCTCTGATGGAA--GTATTTATGAAAATATTAACAAAACAATAA 82488 |||||| | || || || | | |||| || |||| ||| || ||||| ||| Sbjct 37511 AAAGAACTGGCGGTCTGTAGTAACGGAATGGTCTTTAAGAACATC--AACAAGACAGCCG 37568 Query 82489 GAGTTAAAAA-ACTAGAAAAACGATTACGTAGATTGCAACGTAAGGTATCTCGTAAATAC 82547 || | ||| ||| || ||||| || || || |||||||| || || ||||| ||||| Sbjct 37569 CCGTAAGAAAGACT-GAGAAACGCTTGCGGAGGTTGCAACGCAAAGTTTCTCGCAAATAT 37627 Query 82548 CAAAATAATAAAGAAGGGAGTACCTTT-GTCAAAACTTGCAATATTATAAAACTTGAAAA 82606 ||| ||||| ||||| | | | ||| || || || || || ||| ||||| | ||||| Sbjct 37628 GAAATGAATAAGGAAGGAA-TCCGTTTCGTTAAGACATGTAACATTGTAAAAGTCGAAAA 37686 Query 82607 ACAAATTAAACTCTTACAACGAAGATTGTCTAACATTCGTAAAAACTATTTACATCAAAC 82666 ||| | | || || ||| | |||| ||||| || | | |||||| | Sbjct 37687 TTCCATTCGTTTGCTTCATCGGAGAATAACTAATATTCGCGGCAATCACATCCATCAAGC 37746 Query 82667 AACAACTTCTATAGTGAAAACCAAACCTAGAAGAATTGTTATAGAAGATTTGAATGTAAG 82726 ||||| | |||| ||||||||| ||||| |||| || ||||| |||||||| | Sbjct 37747 AACAAACGCGATAGCGAAAACCAAGCCTAGCGCCGTTGTGATGGAAGACTTGAATGTGAA 37806 Query 82727 TGGTATGATGAAGAATAGACACTT-AGCTAAAGCAATACAAAAACAAGGATTCTATGAGT 82785 || ||||||||||| || |||| ||| |||||||| | ||| | | |||||| Sbjct 37807 AGGGATGATGAAGAACCGATACTTGAGC-AAAGCAATTGCAGGGCAAAAACTGCATGAGT 37865 Query 82786 T---CCGTAAACAACTAGAATATAAGTGTG-GAAGAAAAGGTATAGAACTTGTTATTGCA 82841 | ||| |||| | |||| ||||||| |||| | ||| | || | || Sbjct 37866 TTACCCG---ACAAATGAAATACAAGTGTGAGAAG-ATAGGCGCAAGGTTTATCCAAGCC 37921 Query 82842 GATAGATTCTTTCCTTCTAGTAAAACATGCTCTAATTGTGGTAACATCCACAAAAACTTA 82901 || || | || |||| ||| || || |||||| ||| | ||| |||| Sbjct 37922 GACAGGTGGTTCTCTTCATCGAAATTGTGTTCGTGTTGTGGGCGAATCAAGAAAGACTTG 37981 Query 82902 AAACTATCAGATAGAATATTTAAGTGTGACTGTGGTTTTAGTATTGATAGAGACCTTAAT 82961 ||| |||| ||| | | || | | || || || || || | |||||| |||| | || Sbjct 37982 AAATTATCTGATCGTACATATGAATGCGATTGCGGATTAATTATTGACCGAGATATGAAC 38041 Query 82962 GCTAGTATTAATTTAGCTAATTATAATATTTAGATTATCACTAATAAGATA---CTAAAT 83018 || || |||||| ||| ||| |||| |||| | | | || ||| Sbjct 38042 GCGGCAATCAATTTATCTA-----AATTGGCGAATTAACACTTACACGTTATCGCTA--- 38093 Query 83019 ATATGTACCATTCGTTGTATGGGAATTTAAGCCTTTGGAGTATCATA-CAAACTTGAGTA 83077 ||||||| ||||||||||| ||||||| ||| ||||||| | ||| ||||| |||| Sbjct 38094 ATATGTAGGATTCGTTGTATCCGAATTTACGCCCTTGGAGTGTTATATCAAACAAAAGTA 38153 Query 83078 G 83078 | Sbjct 38154 G 38154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418111202948824