Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq752 109 5e-19 seq62 100 2e-16 seq295 87.8 2e-12 >seq752 Length=16686 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | || Sbjct 13120 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 13061 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || |||| || ||||| || |||||||| || ||||| || || || Sbjct 13060 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 13001 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| ||||||||| Sbjct 13000 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGATTACAAC 12941 Query 22399 ATTCAAAA 22406 || || || Sbjct 12940 ATCCAGAA 12933 >seq62 Length=75506 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || || || || || || |||| || || ||||| | Sbjct 20542 AACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCT 20483 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| | | || || ||||| |||||||||||||| || || ||||| Sbjct 20482 TCGGACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGAC 20423 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 20422 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 20363 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || || | || || || |||| |||| || || Sbjct 20362 AACATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 20313 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || ||||| | | Sbjct 20311 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 20252 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| |||||||||||||| || || ||||| || Sbjct 20251 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 20192 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 20191 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 20132 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| | ||||| || Sbjct 20131 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGG 20085 >seq295 Length=50006 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/295 (67%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 128980 TTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTC 129039 || || ||||||||||| ||||| ||| | || || | || || || | ||| Sbjct 31692 TTGATCTCCCACACCGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTC 31633 Query 129040 TGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAAT--TCA 129097 |||||| ||| || || | ||| | ||| |||| | | | || || || || Sbjct 31632 TGCACGGAGCCACCGTCAGCCAGAATCTGGTTGCGCACC--TCAGGCGTCCAGATGCCCA 31575 Query 129098 GTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA-CTTGAAAGTCACCCGCCAAAACG 129156 | | ||||| || | | | ||| ||||| | | | || || ||||| |||| ||| Sbjct 31574 GCTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTG-AACTCACCAGCCAGCACG 31516 Query 129157 CGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGA 129216 || || ||| ||||| ||| ||||||| | || ||||||||||| || || ||| Sbjct 31515 CGGCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGA 31456 Query 129217 GCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTCGCAAACCGTGCT 129271 ||||| | ||| |||||||| ||||||| |||||||| || | ||||||| Sbjct 31455 GCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCT 31401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419704714539880