Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq170 228 1e-54 seq2952 217 3e-51 seq215 168 1e-36 seq62 158 2e-33 seq270 140 6e-28 seq752 129 1e-24 seq1112 111 3e-19 seq658 102 2e-16 seq74 95.1 2e-14 seq295 91.5 3e-13 >seq170 Length=75379 Score = 228 bits (252), Expect = 1e-54 Identities = 389/554 (70%), Gaps = 14/554 (3%) Strand=Plus/Minus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 || ||||| |||||| ||| |||||||| || || |||||||| || ||||| ||| Sbjct 41214 TGAAGCATGCGCCACATGCATTCCACATAGTCACGGGCGTGGCCCCAGTCACGCTTGGCG 41155 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGC--AAGACCGC 268364 |||| ||| || | || ||||| ||| | || |||| ||| | ||||| Sbjct 41154 TCCAGGTTGCCCACAAAGAGGCACCTCTCAATCCCCG----CACGAATGCGCACCACCGC 41099 Query 268365 --GAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAG 268422 | ||||| || ||||||||||| || || ||| | || |||||||||||||| || Sbjct 41098 ACGCGTGATCTTGCGGGTCACGAAGGTTGGTCCGCGTCGCGGACTCTCGTGGTTGAACAG 41039 Query 268423 GATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATG 268481 || ||||| ||| ||| |||| || || || || |||| |||||| || |||| | | Sbjct 41038 AATCCCGTT-CACGGCGTACATCCCGTAGGCTTCTCGGTGGTTCACCACACTCCAAAACG 40980 Query 268482 CAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATC-TTTTGA 268540 ||||| ||| || || ||||||| || || || ||||| ||||| || || | || Sbjct 40979 CAAACTGCTTCGCTACACCGTACGGTGAGCGCGGGTGGAACGGCGT-GTCTTCATCCTGT 40921 Query 268541 GGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTT 268600 ||| | || | |||||||| || | ||| || || |||||||||||| || | Sbjct 40920 GGGGTGGCTTGCACTTTGCCGAATAATTCGCTCGTAGACGCTTGGTAGAACCGCGTCGAA 40861 Query 268601 TTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACG 268660 | ||||| || || | || | | |||| ||| || | ||||| | || ||| Sbjct 40860 TGCTCGAGCCCACACGTGCGCAAACACGTCAGCAGACGCAGCGCTCCCAGCGCGTCGACG 40801 Query 268661 TCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTA 268720 || || || ||||| | |||||| || || || | |||||| | ||||||||||| Sbjct 40800 TCTGCCGTGTACTCGGCCATCTCAAACGAGACTTTAACATGGGACATCGCGCCCAGGTTG 40741 Query 268721 TAAACCTCATCCGGTTTGACCTGCTGCACGATCT-TCACGAGGTTCGTTGAGTCGGTGAG 268779 || || ||||| |||| ||| || |||||||| ||| || |||| | ||| ||||| Sbjct 40740 TACACTTCATCGGGTTGGACGCGCGCCACGATCTGGCAC-AGATTCGACGCGTCCGTGAG 40682 Query 268780 GTCTCCGTAGTGCA 268793 |||||||||||||| Sbjct 40681 GTCTCCGTAGTGCA 40668 >seq2952 Length=1496 Score = 217 bits (240), Expect = 3e-51 Identities = 618/938 (66%), Gaps = 29/938 (3%) Strand=Plus/Minus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATGACGCCC------GC 9946 ||| ||||||||||| | | ||||| | ||| ||||| | ||| ||| || Sbjct 1319 TTAAAAGTCTGCGTCCAGAGTGAACACCTGGTCCTCGGC---CGCGACACCCACACCAGC 1263 Query 9947 CTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAG 10006 ||| |||||| || || |||||||||||||| |||||||| || || || | Sbjct 1262 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 1203 Query 10007 CTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAA 10066 ||||| |||| || ||||||| || | ||||| ||| |||| | Sbjct 1202 ATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAG 1143 Query 10067 AATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCAT 10126 | |||||| |||||||||||||||||||||| ||| || | ||||||||||| |||| Sbjct 1142 CAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCA- 1084 Query 10127 GCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGA 10185 || || ||||| | ||||| | ||| || | || | | || || || |||| Sbjct 1083 GCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGA 1024 Query 10186 TGCTCTTTACCACG--TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCC 10243 | | | | | || || || |||||||||| | | |||||| |||| ||| | Sbjct 1023 T-CGCGTGCACGCGGCTCTCCGG-CAGCTTGTTCACCAACTTCGAGTACATGAGGCACGC 966 Query 10244 AAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGG 10303 || | | ||| | ||||||||| |||||||||| |||||| || || | |||||| || Sbjct 965 GAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGG 906 Query 10304 CATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACC 10363 |||||| || || || |||||||| |||| |||||| || || ||||| | || || Sbjct 905 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCC 846 Query 10364 CTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGCGA---AAAGTA 10420 ||||||| | | || | || ||||| | | |||| | || | | | | Sbjct 845 CTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACACCA 786 Query 10421 TTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGC---CTCGA 10476 || ||| ||||| |||||||| ||||| |||||||||||||| || | | Sbjct 785 CTT-GAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCA 727 Query 10477 AGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCT 10536 || | | || | ||| |||||| || | || | ||||| ||||| || Sbjct 726 AGCGATCCTTCTCCACGG---CGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCT 670 Query 10537 CGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCG 10596 | ||||| | |||| || |||| | ||||||| || ||| || | Sbjct 669 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTT 610 Query 10597 TGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAA 10656 || || | | ||||| | ||||||||| |||| ||||| |||||| | || | Sbjct 609 GCACCTCATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 550 Query 10657 AGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGT 10716 |||| | || | ||||||||||||||||||||| | || |||| || | ||||| Sbjct 549 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTT---CCCCCAGT 493 Query 10717 CTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCT 10776 | || || || || | | |||||| | |||||||| | || | ||||||| Sbjct 492 CCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCT 433 Query 10777 TGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 |||||||||| | | |||| | | | |||| |||||| Sbjct 432 TGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAAC 395 >seq215 Length=35674 Score = 168 bits (186), Expect = 1e-36 Identities = 440/664 (66%), Gaps = 24/664 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||| | |||| ||| ||||| |||||| ||||||||||| Sbjct 20130 CGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGGTGAGACTCAATGTGGTGGAAAGCG 20189 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 |||||||| || || || | |||||| || ||||||||||| ||| | || || Sbjct 20190 TGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGCTTCCACACCTGGCCACTCGTGGGC 20249 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | ||||| | || | ||| || ||||| ||||| |||| | Sbjct 20250 TCAACCTCACCCGTCAGCATTTTGATCATGGTCGACTTTCCGGCACCGTTGGGTCCAAGC 20309 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCT-GAAGATCTCAGG 225216 ||| | || ||| |||| || || | ||| | |||| | || | || || Sbjct 20310 ACGGCGATACGGCTCGACAAAGCGCACGTCACCGAAATGTTGTTGATCGACGGCTTCGGG 20369 Query 225217 G--CCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 | |||| | |||| | | || | ||| | |||||| ||||| Sbjct 20370 GTGCCAGGGTACTGGTACGAACAGTTCGTCAGACGAA------TGATGGGTTTACCCTTG 20423 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC---C 225328 | || | | ||||| |||||||| |||||| |||| ||| ||| | Sbjct 20424 TTCTTGATGTCGGCAAGGAAGCCGGGCTCCGGGAACGTGAACTT---CACGTTGTCAGAC 20480 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 | ||| |||||||| | ||||| || || ||||||||||||| ||||| || Sbjct 20481 TCCAGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCCACGAAAGCAGAAAGGTTGCCC 20540 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || || | ||||| | | ||||||| |||| || | || || | ||| Sbjct 20541 TTGTAGATCTTCAGCTTACG---CGTCTCGTAGTGAATGATGTTGGTACAGACAGTGTCG 20597 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||| ||||| |||||| || |||||||| ||||| | | |||| Sbjct 20598 AGGAACCCAGAGTCGTGCGACACCATGATGCTCGTCACGTTCGGCAGGCTCGTCAGGTAG 20657 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | ||||| || ||||| |||| |||| ||||| || || || || || |||||| Sbjct 20658 TTCTCCAGCCAGGCGACGTTCTTGACATCCAAATGGTTCGTCGGCTCATCAAGGAGCAGG 20717 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || | || ||||| || | || || ||||| ||||| || || || Sbjct 20718 ATGTCTGCCTTCTGCAGCATGGCACGAGCAAGCTCAAGTTTCATCTTCCAACCACCCGAA 20777 Query 225629 AGGG 225632 |||| Sbjct 20778 AGGG 20781 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||| | ||| | || ||||| ||| ||| || | ||| || | ||| || ||||| Sbjct 19586 GTGGGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGAGCACCAAG 19645 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 ||| |||||||| ||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 19646 CGAGTCGCGGTCGAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 19705 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| || || | ||| | ||||||||||||||| ||||| || || || || ||||| Sbjct 19706 CATGGCAGCTCCCAGCACAACCTTCACCTTCTGACCACCAGACAGACCACGCATGCGCGA 19765 Query 224629 GTGAGT 224634 ||| || Sbjct 19766 GTGCGT 19771 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 225778 GTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATC-GGGGAAGCCCTCCAGCTGGC 225836 || ||| || ||| |||| ||| |||| || || | |||||||||||| ||||| | Sbjct 20924 GTTGTGCTCAACGAACACAGTCTTCAGCTCGGA-GCGGCTGGGGAAGCCCTCGAGCTGAC 20982 Query 225837 CATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGT 225896 | || | || || || | ||| || ||| || |||||||| ||| || |||| Sbjct 20983 CGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGCACAGACCGT 21042 Query 225897 AATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGG 225956 || | | || ||||| | | ||||| | | |||||| || ||| | ||||| |||| Sbjct 21043 AACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGCAGAATCATACCACCGTAGG 21102 Query 225957 CAAGGGAGAACTCGCAATCGCACAGGTCC 225985 |||| ||||| ||||| | |||||||||| Sbjct 21103 CAAGCGAGAATTCGCAGTTGCACAGGTCC 21131 >seq62 Length=75506 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 ||||| |||||||| |||| |||||||| ||||| ||||| || |||||||| || ||| Sbjct 20082 TTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCG 20141 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || | || || || | |||||| |||||||| || || | || |||||||| Sbjct 20142 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGC 20201 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||| ||||||||||| || || ||| ||| ||||||| ||| | | || Sbjct 20202 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCC 20261 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 20262 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20311 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| ||||| ||||| || |||||||| || ||| Sbjct 20313 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20372 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 20373 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 20432 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || ||| ||| ||||||| ||| | | || || Sbjct 20433 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 20492 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 20493 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20539 >seq270 Length=49446 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| ||||| ||||| || |||||||| || ||| Sbjct 17061 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 17120 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || ||||| || || Sbjct 17121 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 17180 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| ||||| || ||| ||| ||||| | ||| | | || || Sbjct 17181 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 17240 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || ||||| | ||||| ||||| |||||||| Sbjct 17241 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 17287 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || || || || |||| |||| ||| ||||| ||||| || |||||||| || Sbjct 16826 TTAGTTACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTA 16885 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || | || ||||| | |||||| || ||||| || || | || ||||| Sbjct 16886 GTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTC 16945 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || |||||||||||||| ||||| || ||| ||| ||||| | ||| | | Sbjct 16946 AGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGG 17005 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||||||||| || || ||||| | ||||| || || |||||||| Sbjct 17006 CTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 17059 >seq752 Length=16686 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| ||||| ||||| || | || || || | |||||| |||||||| || Sbjct 12933 TTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12992 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || ||||||||||||||||| || || || |||||| || Sbjct 12993 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 13052 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | | || || |||| |||||||| || ||||| |||||||| || || Sbjct 13053 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 13112 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 13113 ATCTGCATGAT 13123 >seq1112 Length=8881 Score = 111 bits (122), Expect = 3e-19 Identities = 255/377 (68%), Gaps = 18/377 (5%) Strand=Plus/Minus Query 173102 ATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCG 173161 || ||||| || ||||||||||| || ||| | || ||||||||||||||||| |||||| Sbjct 5552 ATCGACACCATCATGCACTTTGCAGCCCAGTCTCACGTGGACAACTCGTTCGGGAACTCG 5493 Query 173162 CTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTC 173221 | | || | || || ||| | | || |||||||| || ||||| |||||||| Sbjct 5492 ATCGAGTTCAGCAAGACCAATATATTGGGCACCCACGTGCTGCTGGAGGCTGCGAGGCTG 5433 Query 173222 TATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGA---GAG- 173277 || || || || |||||||| ||||| || ||||| || ||||| || ||| Sbjct 5432 CAT---GGAGTGAAGAGGTTCATCCATGTGAGCACGGACGAGGTGTACGGAGAAGGGAGG 5376 Query 173278 -CAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCAT 173336 | | || || | || | || || || || || ||||| || ||||| | Sbjct 5375 CCCGACTCCGCTCCGATGACG-----GAAGATCA--TGT-GCTGGAGCCGACGAACCCGT 5324 Query 173337 ATGCAGCAGCCAAGGCTGGTGCCGAAATGAT-GGCACGTGCATATCACACATCGTACAAG 173395 | || || | || || || ||||| | | | || | | || ||| |||| | Sbjct 5323 ACGCGGCCACGAAAGCGGGGGCCGAGTTCCTCGTCAAG-ACGTACCACCGCTCGTTCGGC 5265 Query 173396 CTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAAAA 173455 || || |||| | ||||| |||| || ||||| ||||||||||||| ||| || || Sbjct 5264 CTGCCGACCATCATCACGCGTAGCAATAACGTGTACGGCCCGCATCAGTACCCGGAGAAG 5205 Query 173456 ATGATCCCAAAATTTAT 173472 | ||||| || ||||| Sbjct 5204 CTCATCCCCAAGTTTAT 5188 >seq658 Length=26603 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 || |||||||| | ||||||| ||| ||||||||||||||||||| | | | ||| Sbjct 4285 AGAGCGCCAAGTGCGGCGCGGTCCAGGTAGTTCGTCGGCTCATCCAGCACCAGCAGGTGC 4226 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 |||| | ||||| || ||| | | || ||||||||||||||||| || || |||||| Sbjct 4225 GGGCGGTTCCACATCGCAGCAGCGATGACAAGCTTCACCTTCTGACCACCCGACAGGCCG 4166 Query 224618 CGGATC 224623 |||||| Sbjct 4165 CGGATC 4160 >seq74 Length=59868 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 75 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 134 Query 84516 CCCAC 84520 ||||| Sbjct 135 CCCAC 139 >seq295 Length=50006 Score = 91.5 bits (100), Expect = 3e-13 Identities = 346/531 (65%), Gaps = 23/531 (4%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCG--GCACAAAGATTGCT-G 31757 ||||||||| || || | || ||||| || | ||||||| |||||| ||||| | Sbjct 30963 CACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG--TTGCTCG 30906 Query 31758 CCCGTGATGGTGCCGGCATTGGACTGCATGTTC---TTCACGTTCACGCTGTCCTTGTTG 31814 || ||| |||||| || |||| |||| || ||| | |||||||| Sbjct 30905 AGCG-GATCGTGCCGAGGTT---CTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAC 30850 Query 31815 AGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGC 31874 |||| | | |||| ||||||||| ||||||| | | || || ||| | | | Sbjct 30849 AGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGG 30790 Query 31875 GCTTTGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTA 31933 || |||| || ||| | ||| |||||||| |||||| ||||| |||| | Sbjct 30789 GCATTGATCGTCTTGCG-CGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGTCTCGAA 30731 Query 31934 CTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGC 31993 ||| | ||| || ||| || ||||| ||| |||||| ||| || ||| Sbjct 30730 CTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCACTT 30671 Query 31994 GACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATT 32053 | | | || || || |||||||||||||| ||| | ||||| ||||| || || | Sbjct 30670 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 30611 Query 32054 CCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTC 32113 | ||||| || ||| | || ||||| || ||| |||||| || | | ||| Sbjct 30610 GCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACGTC 30551 Query 32114 GGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTT 32170 || ||| ||||| ||||| | |||||| || || ||||| || || ||||||| Sbjct 30550 GGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTC 30491 Query 32171 TGCGTATGCAGATGTCGTGTC---GTACACCTTCAGCATGGGTACGATGCC 32218 | || || | | |||||| | | ||| |||||||||| | ||| || Sbjct 30490 CACATA-GCGG--GCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCC 30443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921569959685440