Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_009760.1 Length=218948 Score E Sequences producing significant alignments: (Bits) Value seq99 127 3e-24 seq13 91.5 2e-13 seq54 84.2 3e-11 >seq99 Length=50691 Score = 127 bits (140), Expect = 3e-24 Identities = 183/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 164093 TTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAGCAATTTCAATTTCTTC 164152 ||| | | ||||||| | ||||||||| || | ||| | |||| |||||| |||||||| Sbjct 26739 TTTGAGCGCTTTACCTGGTTTGAATGCAGGGATTTTGCTCGCAGGAATTTCGATTTCTTC 26680 Query 164153 ACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAGTTTCGAATGTACCAAA 164212 ||| ||||| ||||| ||||| ||||| || | || || ||| |||||| | ||||| Sbjct 26679 ACCTGTTTGCGGGTTGCGTCCTTTACGTGCAGAGCGCTCGCGAACTTCGAAGTTCCCAAA 26620 Query 164213 GCCGATTAACTGTACTTTGTTACCTTCTGCTAAAGCGTTTGTGATACCGCCAAATACTGC 164272 || | || |||||||||| || | | ||| | | ||| | | ||||| || Sbjct 26619 ACCAACCAATTGTACTTTGTCTCCGCTTTGAAGAGCCTCAGAGATTGCTTCGAATACGGC 26560 Query 164273 GTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTGTTTCAGCTACGTGGTTGAT 164332 || || ||||| || |||||||||| || | ||| | | ||| | ||||| | || Sbjct 26559 ATCAACCGCTTTCGTTACATCCTTTTTGGACAATTCAGTCGCTTCGGACACGTGTGTAAT 26500 Query 164333 TAATTCAGTTTTGTTCAT 164350 || || | ||||||||| Sbjct 26499 CAAGTCTGATTTGTTCAT 26482 >seq13 Length=206566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 506/801 (63%), Gaps = 53/801 (7%) Strand=Plus/Minus Query 135679 TAGTCACGTTGGTCGAAGTATTCACCAGTATGCCATGCAGAACCTTCGAAGTATTTGTAA 135738 || || |||||||||||||||| || || ||||| | ||||||| ||| | ||| Sbjct 5649 TAATCCCGTTGGTCGAAGTATTTGCCTGTTTGCCAATCGGAACCTTGGAATTTCGGATAA 5590 Query 135739 GTACCTTTCTCTTTTGCAAGCTCTACGCTTGAGT---CGATTACATGGTACGCAAACTCT 135795 ||||| || || | ||||| | ||| | | ||| | || || || | | Sbjct 5589 TGTCCTTTTTCCTTGGACAGCTCCATGCTGGCTTTCACGAGCAGATAGTT---AATTTTT 5533 Query 135796 TCATATAATGTATCCGCATAATTTACTGCTGCTTCTGATTCCCAATCTAAT-CCTAAGAT 135854 ||||| | |||| ||| | |||||| |||| ||||||||| | ||| ||| || Sbjct 5532 TCATACAGATTATCGTTATATGTGACTGCTTCTTCCGATTCCCAA-CGAATGCCTTCGAG 5474 Query 135855 AGCAAGTAGATGATGCCATCCATATGCACCCATTCCAATTGGACGGTAGCGTTTGTTTGT 135914 |||||| || ||||| ||| ||| |||| |||| | |||||| | |||| || Sbjct 5473 AGCAAGCAGGTGATGGAGTCCGAATGTTCCCAGACCAACCGCACGGTATTGGCTGTTGGT 5414 Query 135915 -TATACCAGCTTGCAGTACGCTGATTGTATTGATGTCGATAATGTTATCAAGCATACGA- 135972 ||| |||||||| || || | ||||||||||| | ||| || ||||||||| Sbjct 5413 GTATTGG-GCTTGCAGCACTTCAATGTTGTTGATGTCGATTACGTTGTCCAGCATACGAA 5355 Query 135973 ---GTAACGATGCGAATAACACGAGCTAATACACCAGCCGGTACAGCTTTCGCTAAGTTC 136029 | | || | | || ||| | |||||| || || || || || |||| Sbjct 5354 CCTGAATCGGTACCAA----ACGCTCCAATACATCATGAGGCACGGCACGTGCCAAGTGA 5299 Query 136030 ACTGATGCTAAGTTACATACAACGTATTCGCCCGG------AGAACGTACCATATGGATA 136083 | || | ||| || || ||| | |||||||| ||| || || || | Sbjct 5298 ATGGAGTTCAGGTTGCAGACTACGAAATCGCCCGGCACTTTGGAAATCACGATGCGGGTT 5239 Query 136084 TTCTCATTTTCGTCAATGTACTCGCCAAT---AATCATAGATGAAACCTGATTCTGTGCG 136140 | ||| || | | | ||| | | || | || || | || ||||| | Sbjct 5238 TGTCCATCTTTGGTTACGAGCTCTTCTTTTTCAACTACAGTTGCAGATTGGTTCTGCATG 5179 Query 136141 ATTTCTGTACAAAGGTTAGAACAATAAATCGCTGTACGACCAATACCATGAACGTGT--- 136197 ||||| ||||||||||| ||| | | |||||||| ||||| Sbjct 5178 ATTTCGGTACAAAGGTTGGAAGAGT-----------------ATACCATG-CCGTGTGCA 5137 Query 136198 TTGTTCGGGTTCATACGGTTTACTTGGTCACGATAGAACATATAAGGCATTCCCGTTTCA 136257 ||||||||||| |||||| || || || || ||||| |||||| | |||||||| Sbjct 5136 CTGTTCGGGTTCGAACGGTTGACGGTATCCCGGTAAAACATGTAAGGCGTACCCGTTTCC 5077 Query 136258 AGCTGAATTTCCATAATGCGAACCATGATGTCCATTGCACGATGTGTGTCACGAGGTAGT 136317 ||||| || ||| | ||| ||| ||||| || || || |||| || | || Sbjct 5076 AGCTGGGATTTCATGACGCGTTTCATAATGTCAATCGCCTGAACTGTGATGCGGGACAGC 5017 Query 136318 AACGGGTTGTTTACTGCTTCCATATACTTCTCTTCGTAA---TACTTCGTAT-CCTTTTC 136373 | ||||| ||| || |||||| ||| |||| || || ||||| | | || Sbjct 5016 AGCGGGTGGTTCACCGCTTCCTCATATTTCT-GACGGAACGCGCCTTCGCCTACGGACTC 4958 Query 136374 ATCATAGAAGTCATCTAGCGTTAATAGGTTACCATTCTCATCTTTCCATTGCATGTGTTG 136433 ||||||||| || || ||| | | | ||| ||||| |||||||| ||| || Sbjct 4957 ATCATAGAAATCTTCCAGCCCGAGTGGACGACCGTTCTCGTCTTTCCAACCCATCACTTT 4898 Query 136434 TTTGATTTGATGAGGACAGAA 136454 ||| ||| ||| || ||||| Sbjct 4897 TTTCGTTTCATGCGGGCAGAA 4877 >seq54 Length=68445 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 164077 ATTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAG 164136 |||||||||| ||| ||| | | || || |||||||| || || || | | ||| Sbjct 31016 ATTATTTTACGGCTTCTTTAAGTTTGTTGCCTGCTTTGAACGCAGGAACGGTGGACTCAG 31075 Query 164137 CAATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAG 164196 ||| | ||||| | || ||||| ||||||||||| ||||| | | ||| | || | Sbjct 31076 GAATCACGATTTCATTCCCTGTTTGCGGGTTACGTCCGGTACGACCGGAACGTTTGCGGG 31135 Query 164197 TTTCGAATGTACCAAAGCCGATTAACTGTACTTTGT 164232 | || || || ||||||||||| | |||||||||| Sbjct 31136 TCTCAAAAGTGCCAAAGCCGATCAGTTGTACTTTGT 31171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700465741231360