Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_011222.1 Length=44929 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 6e-12 >seq2 Length=712559 Score = 84.2 bits (92), Expect = 6e-12 Identities = 204/306 (67%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 19933 ATACATGAGCTCCTTTGGATGTTGAAGGGGGACACCAATATAAAATACCTAAATGAAAAT 19992 || |||||| | | ||| | |||| ||||| || |||||| || || || |||||| Sbjct 517306 ATTCATGAGTTGTTATGGTTTTTGAGCGGGGATACGAATATATCCTATCTGAAGGAAAAT 517247 Query 19993 GGTGTTCATATTTGGGACGATTGGGCAAAGCCTTCCGGTGATCTTGGACGTATATACGGT 20052 ||||| | || ||||| |||||||| | |||||| | || | ||||||| Sbjct 517246 GGTGTGAAGATCTGGGATGATTGGGCTGACGAAAATGGTGATTTGGGTCCGGTATACGGA 517187 Query 20053 AAACAATGGCGTGACTGGCGTATAAATAGCAA---AATGAAAGTAGATCAAATTGATTCA 20109 ||||||||| ||| | | | | ||| | |||| | ||||| |||| | Sbjct 517186 TCTCAATGGCGT-ACTTGGGAAGCA--CCCAATGGAGAGAAAATTGATCAGATTGCAGCT 517130 Query 20110 GTTATAGATATGATTAAGTTTAACCCGGAGTCAAGAAGGCTAATTGTTAGTGCTTGGAAT 20169 ||||| ||| ||||| || ||||| ||| || | | | |||||||| |||||| Sbjct 517129 GTTATTGATTCAATTAAAAACAATCCGGATTCACGACGTCACCTCGTTAGTGCCTGGAAT 517070 Query 20170 GTTGGAGAAATACACATGATGGCACTTCCTCCGTGCCACTGCTTTTTTCAGTTCTATGTG 20229 || | || || ||| ||| ||| || || ||||| | | |||||||| || ||| Sbjct 517069 GTGGCGGAGATTAACAACATGAAACTGCCCCCTTGCCATTTCGCGTTTCAGTTTTACGTG 517010 Query 20230 TCTGAG 20235 ||||| Sbjct 517009 GCTGAG 517004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143643434934384