Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_011421.1 Length=132562 Score E Sequences producing significant alignments: (Bits) Value seq13 84.2 2e-11 >seq13 Length=206566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 318/485 (66%), Gaps = 23/485 (5%) Strand=Plus/Plus Query 35780 ACGCATGGATCTTGTTAAGAAAGCATATTGGGTTCTCAGTAATCTTTACATTACTGTAGC 35839 ||| |||||||| |||||| |||| || |||| | || || | ||||| || | ||| Sbjct 4372 ACGTATGGATCTCGTTAAGGAAGCTTACTGGGCAATGAGCAACATGTACATGACAGCAGC 4431 Query 35840 TACACCCACAATGGGGAATGCAGGTAGACCAGATGGTCAGTTAAG-CTCG---TGTTTCA 35895 |||||| || ||| ||||| || | | || ||| | | || ||| || |||| Sbjct 4432 TACACCTACGATGTCCAATGCGGGCAAAAAAG-TGGCCGGACAACTCTCCAGCTGCTTCA 4490 Query 35896 TTGGAACAGTAGAAGATTCCCTAGACAATATCTATGATAATAACAAAGATTCAGCTATGG 35955 ||| || || || |||||||| || |||| ||| |||| ||| ||| | Sbjct 4491 TTGATACCGTGGATGATTCCCTTGAGGGCATCTTCGATTCCAACACTGATGTAGCAC--G 4548 Query 35956 TGTCT--AAGTTTGGTGGGGGTATCGGGGTTTACATGGGTAAAATCCGTTCACTCAA--C 36011 | || || | || ||||| ||||| |||||| | |||||| || | | | | | Sbjct 4549 TCTCAGCAAAATGGGCGGGGGCATCGGCGTTTACCTCGGTAAAGTCAGAGCTCGCGGTTC 4608 Query 36012 AGTTACATCCGTGGTATGAAAGGTA-AGTCTCAAGGTGTTATCCCTTGGATTAAAGGGCT 36070 || ||||||| ||| ||| || | ||| || || || ||||||||| || Sbjct 4609 AG--ACATCCGGGGTCACAAAAATACAAGCTCT-GGCGTAATTCCTTGGATTCGCCAACT 4665 Query 36071 TGAAAATACAGCAAATAGTGTAGACCAGCTAGGTCAGCGTAAAGGTGCTATTGCAGTTTA 36130 | ||||| || || ||||||||||| || ||||||||||| || || ||||| Sbjct 4666 AAATAATACTGCGGTCAGCGTAGACCAGCTTGGAACACGTAAAGGTGCGATCGCCGTTTA 4725 Query 36131 CCTAGACATCTGGCATAAGGATGTTATGGAATTCCTGCAAATTGGTACT-AATAACGGGG 36189 || ||| | | || || || | ||| ||||| | | || || || || || | Sbjct 4726 TCTGGACGTTTTCCACAAAGACATCTTGGCCTTCCT-CGATCTGAAGCTGAACAATGGTG 4784 Query 36190 ATGA---GAGACGTAAAGCACGTGACGTATTCCCAGGCTTATGTGTACCAGACCTTTTCA 36246 | || || ||| || | ||||||||||| ||| | || | || ||||| |||| Sbjct 4785 ACGAGCGGATGCGT---GCGCATGACGTATTCCACGGCATTTGCCTGCCTGACCTGTTCA 4841 Query 36247 TGGAG 36251 ||||| Sbjct 4842 TGGAG 4846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424050073456856