Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_012756.1 Length=31276 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 7e-16 >seq10 Length=223028 Score = 96.9 bits (106), Expect = 7e-16 Identities = 197/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 8343 TTTTGGTAGGTCGCTTGACTCGTGATCCTGAGTTACGATACACACCGTCAAATGTGGCTG 8402 ||||| | ||||| || |||||||| ||||||||||| || || | |||| | | || Sbjct 111502 TTTTGATTGGTCGGTTAACTCGTGACCCTGAGTTACGCTATACTC---CAAACGGAGTTG 111446 Query 8403 TTGCGACT---TTCAGTTTGGCAGTGAATCGCAATTTTAAGAATCAGGCAGGTGATCGTG 8459 | ||| || | |||||||||| || | ||||| | ||| | || || |||| Sbjct 111445 CCGTAACTCAGTTTACTTTGGCAGTGGATAGACCTTTTACAAGTCAAGGGGGAGAACGTG 111386 Query 8460 AAGCTGATTTTATCAGTTGCATCATGTGGCGTCAACAGGCTGAAAACTTTGCAAATTGGC 8519 |||| ||||||||| | ||| ||||||||| || |||| | ||| |||| Sbjct 111385 AAGCAGATTTTATCCCGATCGTCACTTGGCGTCAATTAGCAGAAACGTGTGCCAATTATT 111326 Query 8520 TTAAAAAAGG-TGCTCTTGTAGGAATCACAGGCCGCATCCAGACTCGTAGCTATGATAAT 8578 | ||||| ||| | | || | || ||| || || ||| ||||| ||||| ||| Sbjct 111325 TGCGTAAAGGCCGCT-TAGCAGCAGTCGAAGGTCGAATTCAGGTTCGTAATTATGAGAAT 111267 Query 8579 CAGCAAGGCCAACGTGTCTATGTGACAGAAGTGGTAGCTGAAAGTTTTC 8627 | | || |||| |||||||| |||||||| | ||||| | | ||| Sbjct 111266 AACGAGGGAAAACGCGTCTATGTCACAGAAGTTATTGCTGACAATGTTC 111218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99956196575712