Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 8e-12 >seq6 Length=341960 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 32023 GGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGA 32082 ||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 289574 GGATTCGAACCCCCGACCGACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGCTACTGA 289633 Query 32083 GTCATGA 32089 | ||||| Sbjct 289634 GACATGA 289640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 32023 GGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGA 32082 ||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||| ||| Sbjct 282259 GGATTCGAACCCCCGACCGACGGCTTAGAAGGCCGTTGCTCTATCCTGCTGAGCTACTGA 282200 Query 32083 GTCA 32086 | || Sbjct 282199 GACA 282196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622089401098880