Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_013696.1 Length=42822 Score E Sequences producing significant alignments: (Bits) Value seq44 131 5e-26 >seq44 Length=71862 Score = 131 bits (144), Expect = 5e-26 Identities = 325/485 (67%), Gaps = 19/485 (4%) Strand=Plus/Plus Query 957 AGTCTCAGTTAGATCAGGGCAGGGTGTTGGAAAAACG-GCGTTGGAGGCTG--GTGCTAT 1013 ||| || || |||| || ||||||||||| || || || ||| |||||| ||| | Sbjct 43593 AGTGTCGGTGCGATCTGGACAGGGTGTTGGCAAGACCAGCCTTG-AGGCTGCGGTGGCA- 43650 Query 1014 TCTTTGGTTTCTAACATGCCGGCCATATGCAAAAGTAATAGCAACTGCTCCGACGATGAA 1073 || ||||| ||| | || || | | | || || || || || ||||| | Sbjct 43651 -CTATGGTTCCTATCGTGTTTCCCGTTTCCGAAGGTTATCTGTACAGCACCGACTCGTCA 43709 Query 1074 ACAATTATACGATGTTCTATGGGCAGAAGTGGCTAAGTGGCTGAATAACAG---CTTGAT 1130 ||| || ||||||| | ||||| || | ||| |||| | || || |||| | Sbjct 43710 ACAGTTGCACGATGTCTTGTGGGCTGAGATTAGTAAATGGCAAGAGAAAAGTCCCTTGCT 43769 Query 1131 TAAAGACTTACTTAAATGGACCAAGACGAAAATTTATATGGT---TGGCGATTCAGAACG 1187 ||| |||| || ||||| || || || ||||||||| | ||| ||||| Sbjct 43770 CAAAAGGATACTCAAGTGGACGAAAACTAAGATTTATATGCGAAATTACGAG---GAACG 43826 Query 1188 ATGGTTTGCTACAGCTCGAACAGCAACTAAACCAGAAAATATGCAAGGATTTCACGAAGA 1247 |||||||||||||||||| ||||| || || || || || ||||| || || || ||||| Sbjct 43827 ATGGTTTGCTACAGCTCGGACAGCCACCAAGCCCGAGAACATGCAGGGTTTCCATGAAGA 43886 Query 1248 CCATATGTTAATAGTGGTTGATGAAGCATCAGGTGTTGCTGATCCCATTATGGAAGCAAT 1307 | ||| | | | || ||||| || ||||| || | |||| |||||||| || || Sbjct 43887 GTACATGCTTTTCATTGTGGATGAGGCTTCAGGGGTAGAGGATCGGATTATGGAGGCCAT 43946 Query 1308 ATTAGGTACTCTTTC--AGGATTTGACAATAAATTACTAATGTGTGGGAACCCCAACAAT 1365 || ||||| || || ||| || |||||| | || |||||||| ||||| | | Sbjct 43947 CTTGGGTACACTCTCCGGGGAGTT--CAATAAGCTGCTCATGTGTGGTAACCCGACTCGT 44004 Query 1366 ATTGAAGGGGTTTTTTATGATTCGCATAATACAGATAGAGACAAGTATAGAACGCACAAA 1425 | || || ||||||||||| || || | || | | | || | ||||||||| Sbjct 44005 ACCAGCGGTGTGTTTTATGATTCACACAACAGGGACCGGGCAGATTACAACACGCACAAA 44064 Query 1426 GTTTC 1430 ||||| Sbjct 44065 GTTTC 44069 Score = 93.3 bits (102), Expect = 1e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 1820 TAGATGATACAGGTGTTGGTGGAGGTGTTACTGATAGACTTAAAGAAGTAATTAGCG-AT 1878 |||||||||| ||||| ||||| || || |||||| | || || || || || |||| | Sbjct 44450 TAGATGATACTGGTGTAGGTGGTGGAGTCACTGATCGTCTGAATGAGGTTAT-AGCGGAA 44508 Query 1879 GAAAAACTTCCCTATGAAGTAATTCCGGTAAATAATGGAGAATCTTCTACAGACGATTAT 1938 ||| ||||||||||||||| ||||| ||||||||||| ||| ||| || || || Sbjct 44509 GAAGGACTTCCCTATGAAGTTATTCCTATAAATAATGGATCATCATCTTTGGATGAACAT 44568 Query 1939 TATGCAAA 1946 |||| ||| Sbjct 44569 TATGGAAA 44576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136901399394816