Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq270 136 9e-27 seq62 127 5e-24 seq752 104 6e-17 seq326 86.0 1e-11 >seq270 Length=49446 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| || || Sbjct 16839 CGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 16898 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| || ||||| || || ||||||||||| || || ||| Sbjct 16899 CGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCT 16958 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||||||||| |||| | ||| | | || || ||||| Sbjct 16959 TCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAG 17018 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| | ||| |||||||| || || Sbjct 17019 GTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTG 17056 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| || || Sbjct 17067 CGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 17126 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| || ||||| || || ||||||||||| || || ||| Sbjct 17127 CGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCT 17186 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||||||||| |||| | ||| | | || || ||||| Sbjct 17187 TCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAG 17246 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| | ||| ||||| || || || Sbjct 17247 GTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTG 17284 >seq62 Length=75506 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||| || || |||||||| |||| ||||||||| || || Sbjct 20091 CGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 20150 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 20151 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCC 20210 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||||| |||| || ||| | | || || |||| | Sbjct 20211 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGC 20270 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || ||||| || || || Sbjct 20271 GTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTG 20308 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| || || |||||||| |||| ||||||||| || || Sbjct 20319 CGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 20378 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 20379 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCC 20438 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||||| |||| || ||| | | || || |||| | Sbjct 20439 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGC 20498 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || ||||| || || || Sbjct 20499 GTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTG 20536 >seq752 Length=16686 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| |||||| || | | || | || || || |||||||| |||||||||| Sbjct 12931 CCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12990 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || ||| ||||| ||||| || || ||||| || | Sbjct 12991 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 13050 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || || |||| |||||| ||||| ||||| || || ||||||| Sbjct 13051 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 13110 Query 199620 AAATTTG 199626 | || || Sbjct 13111 AGATCTG 13117 >seq326 Length=69913 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||| || | ||||||||| | | ||| Sbjct 34927 CGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTG 34986 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| |||||||||||||| || Sbjct 34987 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGG 35036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178852842344984