Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq752 161 1e-34 seq62 156 5e-33 seq270 152 6e-32 seq326 107 2e-18 >seq752 Length=16686 Score = 161 bits (178), Expect = 1e-34 Identities = 152/191 (80%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| || || || ||||| |||| |||||||||||||||||||| | Sbjct 12931 CCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12990 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | ||| | || ||||||||| ||| |||| ||||| | | | Sbjct 12991 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 13049 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| ||||||||||| || || ||| Sbjct 13050 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 13109 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 13110 AAGATCTGCAT 13120 >seq62 Length=75506 Score = 156 bits (172), Expect = 5e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| ||| |||||| ||||| ||||||||| Sbjct 20311 TGCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 20370 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||||||||| |||| ||||||||||||| || Sbjct 20371 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCG 20430 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||| |||| ||| | ||| | | | | ||| | ||| Sbjct 20431 GGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCC 20489 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || |||| ||||||||| |||||||||| ||| || || ||||| ||||| || Sbjct 20490 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 20542 Score = 154 bits (170), Expect = 2e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| ||| |||||| ||||| ||||||||| || ||||| | Sbjct 20096 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 20155 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| ||||||||||||| ||| | || |||||| Sbjct 20156 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 20215 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||| |||| ||| | ||| | | | | ||| | ||||| |||| ||||| Sbjct 20216 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 20274 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||||| ||| || || ||||| ||||| Sbjct 20275 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20311 >seq270 Length=49446 Score = 152 bits (168), Expect = 6e-32 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| || || || | | ||||| |||||| |||| ||| |||||| ||||| |||| Sbjct 16825 ATTAGTTACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGT 16884 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 ||||| || ||||| |||| || ||||||||||| ||||| |||| ||||||||||| Sbjct 16885 AGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGT 16944 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTC 46537 | | ||| | || ||||||||| || |||| ||| | ||| | | | || ||| | Sbjct 16945 CAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAC 17003 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| |||| ||||| || |||||||||| || || |||||||| ||||| Sbjct 17004 GGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 17059 Score = 149 bits (164), Expect = 7e-31 Identities = 175/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| ||| |||||| ||||| ||||||||| Sbjct 17059 TGCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 17118 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| |||| |||||||||||| | || Sbjct 17119 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 17178 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| || |||| ||| | ||| | | | || ||| || ||| Sbjct 17179 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 17237 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| ||||| || |||||||||| || || || ||||| ||||| ||| Sbjct 17238 ACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTG 17291 >seq326 Length=69913 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||||| || || |||||||| || |||||||| | Sbjct 34932 ACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCC 34991 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| ||||||||||| Sbjct 34992 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 35033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565206237935040