Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2952 109 7e-19 seq78 89.7 6e-13 seq54 87.8 2e-12 >seq2952 Length=1496 Score = 109 bits (120), Expect = 7e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 840 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 899 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 900 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 >seq78 Length=176444 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 ||||| | |||| |||||||| || ||| | || || |||||||| || |||||| Sbjct 72574 AGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 72515 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || ||||| || |||||||| | ||||| || || || || | || |||||||||||| Sbjct 72514 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 72455 Query 176996 TCTGTCA 177002 || |||| Sbjct 72454 TCAGTCA 72448 >seq54 Length=68445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 332/521 (64%), Gaps = 0/521 (0%) Strand=Plus/Plus Query 15729 TCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATACTC 15788 ||||| ||||||||| | | || || || ||||| ||||| || |||| || || | Sbjct 20535 TCATTCAGGAGATTTTCCAAATCTGCACCGGAGAATCCCGTAGTACGCTTCGCAATGATG 20594 Query 15789 CCCAACTTGACATCTTCAGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTTCTCG 15848 ||| ||| ||||||| | | ||| | || | ||| || || | | || Sbjct 20595 TCCAGCTTCACATCTTTGGTAAGTGGCTTGTTGCGTGAGTGTACTTTCAGAACCGCTTCA 20654 Query 15849 CGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGGCGAAGG 15908 || || | || ||| || | || || | ||| ||||| || ||||| || || Sbjct 20655 CGACCTCTCACGTCAGGGCGATCCACCGTAATTTGACGGTCAAAACGTCCTGGACGCAGC 20714 Query 15909 AGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCG 15968 | || || || || || | || ||||| || || | || | ||||||| | | Sbjct 20715 AAGGCAGGGTCCAGAATGTCTGCACGGTTCGTAGCTGCAACGATGATAATACCTTCATTG 20774 Query 15969 TTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTC 16028 | ||||||||||| || | | |||||| | |||||||| ||||| || | Sbjct 20775 GCTCCGAAACCATCCATTTCAACGAGCAACTGGTTGAGTGTTTGTTCACGTTCGTCGTGA 20834 Query 16029 GCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 | | |||||||| || || ||| || |||||||| ||||| || |||| | Sbjct 20835 CCACCACCAAGACCAGCACCACGCTGACGTCCTACCGCATCAATTTCATCGATAAAGATG 20894 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 || ||||| |||| || |||||| | || |||||||| || || ||| Sbjct 20895 ATACATGGGGCGTTTTTCTTCGCATTTTCAAACAAGTCACGTACACGAGATGCACCGACA 20954 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || |||||||| || || |||| | ||||| || ||| || ||| | |||| Sbjct 20955 CCGACAAACATTTCAACGAAGTCAGAACCGGAAATGCTGAAGAATGGTACACCTGCTTCA 21014 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || |||| || || || || | || ||||| ||||| || Sbjct 21015 CCGGCAACAGCACGAGCAAGCAAGGTTTTACCTGTACCCGG 21055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620707079757440