Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_015274.1 Length=56506 Score E Sequences producing significant alignments: (Bits) Value seq11 104 8e-18 >seq11 Length=216871 Score = 104 bits (114), Expect = 8e-18 Identities = 219/327 (67%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 211 TGACTATAATCCAGACGTCCTTGAAACTTTCCCTAACAAACATCCTGAAAATAATTACCT 270 ||| ||| |||||| | | | || | |||| |||||| || || | | |||| | Sbjct 47449 TGAATATGATCCAGGCATTTTGGAGAATTTCGATAACAAGCACCCGTACCGTGATTATTT 47508 Query 271 AGTAACATTTGACGGATATGAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTT 330 || | ||| || | || ||||| || ||||| | || || ||||| ||||| Sbjct 47509 TGTCAAATTCAACTGCCCCGAGTTCACCAGTCTGTGCCCGATTACGGGTCAGCCGGACTT 47568 Query 331 CGCGAATGTTTTCATTAGTTACATTCCAAACGAAAAGATGGTTGAATCTAAATCATTGAA 390 || | ||| ||||| ||||| || | | ||| ||||| || || || | || Sbjct 47569 TGCAACCATTTATATTAGCTACATCCCTGATGTAAAAATGGTAGAGAGCAAGTCTCTTAA 47628 Query 391 ATTGTACTTATTCAGTTTCCGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTAT 450 ||||| | ||||| ||||| ||||| || || |||||||| ||||| ||||||| || Sbjct 47629 GCTGTACCTGTTCAGCTTCCGCAACCATGGAGATTTCCACGAGGATTGTGTGAACATCAT 47688 Query 451 TTTGAATGACTTGTATGAATTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCAC 510 |||| ||| || | | ||||||| || ||||||||||| |||| ||| || Sbjct 47689 CATGAACGACCTGATTAAGCTGATGGACCCGCGCTACATTGAAGTGTGGGGCAAATTTAC 47748 Query 511 TCCTCGTGGTGGAATTTCAATTTACCC 537 || || || || || || || |||| Sbjct 47749 GCCGCGCGGCGGCATCTCCATCGACCC 47775 Score = 89.7 bits (98), Expect = 2e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 1930 ATGCCTATCATGGAAATTTTCGGTCCTACAATTCAAGGTGAAGGAATGGTTATAGGTCAA 1989 || ||| | ||||| || || || || || |||||||||||||| ||||| || || || Sbjct 46543 ATTCCTGTGATGGAGATCTTTGGCCCGACGATTCAAGGTGAAGGTATGGTCATTGGGCAG 46602 Query 1990 AAGACTATTTTCATTCGAACTGGTGGATGCGACTATCATTGCAACTGGTGTGACTCAGCC 2049 || || || ||| | || || | || ||||| |||| ||| |||||| ||||| ||| Sbjct 46603 AAAACGATGTTCGTCCGCACCGCGGGCTGCGATTATCGCTGCTCCTGGTGCGACTCTGCC 46662 Query 2050 TTTACCTGGAACGG 2063 || || ||| |||| Sbjct 46663 TTCACATGGGACGG 46676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180687832391232