Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_019487.1 Length=143986 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 >seq3 Length=592184 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35541 CGGCGTAATTCCACATCCTTTAAATCGTTCTTATGAAGATTCGTCCTATGTAGTCGCATA 35600 ||||| | || ||||||||| | |||| |||||| | ||| ||| |||| | ||||| Sbjct 48737 CGGCGCAGTTTCACATCCTTCAGGTCGTCCTTATGCAAATTGGTCATATGCACCCGCATG 48678 Query 35601 CCACACCCGATGTCACTTCCAACGATGGATGGTGAAATGAACCCATCTTTAGCATTCCAA 35660 ||||| ||||||||||| || ||||||||||| || | || ||| || |||| ||| Sbjct 48677 CCACAGCCGATGTCACTGCCTACGATGGATGGAGATACAAATCCACTCTTGGCATCCCAT 48618 Query 35661 ACAGCAGTAGTCCCTATACAAGTACCTACTCCAACATGCGCGTCCGGCGTGTAGCTCATA 35720 || || || || || || || |||||||| || |||||| | || |||||||| |||||| Sbjct 48617 ACCGCTGTTGTGCCGATGCAGGTACCTACACCGACATGCACATCAGGCGTGTAACTCATA 48558 Query 35721 TGAACATTACGAGGTATTTGTAGGTTATT 35749 | | ||| || ||||| || || || Sbjct 48557 TAGGAAATACCCGGGATTTGAAGATTGTT 48529 Score = 122 bits (134), Expect = 8e-23 Identities = 374/567 (66%), Gaps = 11/567 (2%) Strand=Plus/Minus Query 34395 GCTCCTTTCACAACAACTAATGGTTTACAAACTGCTACTACTGAAGCAAGTTTCGCTCCT 34454 ||||| |||||| | | | ||||||||| ||||| ||| ||| || || || Sbjct 49835 GCTCCCTTCACAGCGGCAAGTGGTTTACATTTGGCTACAACTTGAGCCAGACCTGCACCG 49776 Query 34455 ACTACAGAATCAATAATTTGGTCGACATCCTTGTAAGCTTGAGGACACTCATCTAAGATA 34514 ||| ||| ||||||| ||||||| || || ||||| || | ||||||| || Sbjct 49775 GTCACACTATCCATAATTTCATCGACATTTTTATATGCTTGCGGCGATTCATCTATAATG 49716 Query 34515 GTCTCGAGAGACTTCTGGTTGACTACAATCTCATCGTCTTCTCCAACTCTCAAGCTCTTA 34574 | || || || |||||| || ||||||||||| || || || | || || | | Sbjct 49715 GATTCAAGTGAACGCTGGTTCACCACAATCTCATCTTCAGTCCCCACGCCCA-GCGCCGA 49657 Query 34575 G-CAAACTCGTCAACCGTAACGAC-CTCTCTTGTAGCTCGACGACTACGAACACGACCAG 34632 | |||| || || || ||||| | | || |||| ||| ||| ||||| || || | Sbjct 49656 GGCAAAATCCTCCACGGTAACCAGGCGCT-TTGTTGCTGTACGCGAACGAATGCGTCCTG 49598 Query 34633 CCCCATGACAGATAGAATAAAAGTTCTTTACACCCTCGTCTTTACCAAGCATAATGTAGC 34692 ||||||||||||| |||||| | || | |||||| || || | ||| || || Sbjct 49597 CCCCATGACAGATTGAATAATAATTATCCTTCCCCTCGGGTTGGCCTACCATGATATATG 49538 Query 34693 TTGACGTCCCCATAGAGCCCGGAATAAGCGCCGGGTGTCCAGTTTCCTTAAACACCTTTG 34752 | |||||||| || || |||||||| || || || || ||| || | | ||| | Sbjct 49537 AAGCAGTCCCCATTGAACCAGGAATAAGTGCGGGATGACCTGTTGCCAGATATGGCTTCG 49478 Query 34753 GGTTTAAATGGTGTCCAGCCGGAAGAGCTCTTGTAGCTCCTTTACGATGTACGATATGCG 34812 | || | || || || || | || | |||||||||||| || ||||| | | | Sbjct 49477 GATTATCCGGATGACCTGCAGGCAATGCGCGTGTAGCTCCTTTGCGGTGTAC-AAAAACC 49419 Query 34813 GAGAGTT--TC--TATGAAACTCGACTTGAGCATAGTTATGCATAAGATCATATAAAAGC 34868 || || || || | || | |||||||| ||||| |||||||| | | Sbjct 49418 GACCCTTGATCCGCGTGCGATTCCTCCCATGCATAGTTGTGCATCAGATCATA-GAGGGT 49360 Query 34869 TCAGTTTCCACATGTT-CACCCATAACATCCCGGAAAGCTTGGGATACACCATACGCAAT 34927 | | | | ||| || ||| | |||||||| ||||||| | | |||||||||| Sbjct 49359 GCGGAATTCGCATTTTGGACCAAAGACATCCCGAAAAGCTTCGCGAATCGCATACGCAAT 49300 Query 34928 CATATGACGGTTCGCAACAGCGTAGTT 34954 || ||| || ||||| || || || || Sbjct 49299 CAGATGGCGATTCGCTACGGCATAATT 49273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460600990312320