Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq2 262 1e-65 >seq2 Length=712559 Score = 262 bits (290), Expect = 1e-65 Identities = 511/751 (68%), Gaps = 8/751 (1%) Strand=Plus/Minus Query 45438 TGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGATC 45497 |||| | ||||| || || | || || ||| | || ||||||||| | || | ||| | Sbjct 517470 TGAAGAACTATCTTGATTTATTACAGGATATCCTGGATAACGGCGTGCATAAGGGAGACC 517411 Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 | || ||||| || || || || || ||| | ||||| || | | || | || | Sbjct 517410 GCACCGGAACGGGAACCCAATCCGTTTTTGGCAGACAGCTCCGATATGACCTATCCGAAG 517351 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | |||||||| || || || || | ||| | || ||||| |||| || | | Sbjct 517350 GGTTCCCGCTTGTAACAACCAAGCGAATCCATCTGAAATCAGTCATTCATGAGTTGTTAT 517291 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 ||||||| | || ||||||||| | |||| || |||| |||||||||| ||| |||| Sbjct 517290 GGTTTTTGAGCGGGGATACGAATATATCCTATCTGAAGGAAAATGGTGTGAAGATCTGGG 517231 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 | || ||||| || ||||| || ||| | || || | ||||| | |||||||| | | Sbjct 517230 ATGATTGGGCTGACGAAAATGGTGATTTGGGTCCGGTATACGGATCTCAATGGCGTACTT 517171 Query 45738 GGAAAGGGGCTGACGG---GAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCA 45794 || ||| | | || ||||| | || || ||||| || || || | ||| | Sbjct 517170 GGGAAGCACCCAATGGAGAGAAAA---TTGATCAGATTGCAGCTGTTATTGATTCAATTA 517114 Query 45795 AGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGG 45854 | ||| ||| | || || || || || || || ||||| ||||| || | Sbjct 517113 AAAACAATCCGGATTCACGACGTCACCTCGTTAGTGCCTGGAATGTGGCGGAGATTAACA 517054 Query 45855 AAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGT 45914 | ||||| ||||||| || |||| ||| |||||||||||||| || | || | | Sbjct 517053 ACATGAAACTGCCCCCTTGCCATTTCGCGTTTCAGTTTTACGTGGCTGAGGGTAAACTAT 516994 Query 45915 CATGCATG-TGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCT 45973 |||| ||| | ||| |||||| || ||||| || || || |||| |||||||| || Sbjct 516993 CATGTATGCTCACAAT-GCGTTCCGTGGATACGTTCCTGGGGCTGCCATTTAACATTGCC 516935 Query 45974 AGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAACTC 46033 |||||||| || ||||||||||| ||||||| || || || || || || || || || Sbjct 516934 AGCTATGCATTGCTGACACATATGATTGCCCAGCAGTGTGATCTTGAAGTGGGAGAGTTC 516875 Query 46034 ATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAG 46093 || | |||| || || || || | ||| ||| ||| ||||||||| |||| ||| Sbjct 516874 ATCTGGTCCGGTGGGGATGTACACATCTACTCAAACCATGTGGAACAAGTGAAAACCCAG 516815 Query 46094 CTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATC 46153 || ||| || || | | |||| ||||| || ||||| || |||||| || || Sbjct 516814 TTGGAGCGTGAACCATACGCATTGCCTAAGCTGGTCATCAAGCGTAAGCCGGATTCCATT 516755 Query 46154 TTTGACTATGAATACGAGGATTTTGAATTTG 46184 ||||| ||| | || |||||||| |||| Sbjct 516754 TTTGATTATACGTTTGAAGATTTTGAGTTTG 516724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157741872802128