Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 7e-14 >seq2 Length=712559 Score = 93.3 bits (102), Expect = 7e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 123106 GTTCCTAGGCGTACCGTTTAACATTGCCTCTTACGCGCTCCTGATACACATGTTTGCCCA 123165 |||||| || | || |||||||||||| || || | |||| ||| ||| ||||||| Sbjct 516962 GTTCCTGGGGCTGCCATTTAACATTGCCAGCTATGCATTGCTGACACATATGATTGCCCA 516903 Query 123166 GCAGGCCAATATGGCAGTAGGTGACTTCGTGTGGACGGGTGGGGATGTGCATCTGTACTC 123225 |||| || | | ||| || || ||| | ||| | ||||||||||| || | ||||| Sbjct 516902 GCAGTGTGATCTTGAAGTGGGAGAGTTCATCTGGTCCGGTGGGGATGTACACATCTACTC 516843 Query 123226 CAACCACCTGGAGCAGGCAGATTTGCAGTTAACTCGCGAACCTCATCCGTTACCACAACT 123285 ||||| |||| || | | ||||| || ||||| | | || || | || Sbjct 516842 AAACCATGTGGAACAAGTGAAAACCCAGTTGGAGCGTGAACCATACGCATTGCCTAAGCT 516783 Query 123286 GCGGATTAAACGTCGTCCGGATTCTATCTTCGACTATAAGTTTGAAGATTTCGA 123339 | || || ||| |||||||| || || || |||| |||||||||||| || Sbjct 516782 GGTCATCAAGCGTAAGCCGGATTCCATTTTTGATTATACGTTTGAAGATTTTGA 516729 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 122419 AGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCA 122478 |||||| || || ||||| |||| || | || ||| ||| | || | |||||| Sbjct 517415 AGACCGCACCGGAACGGGAACCCAATCCGTTTTTGGCAGACAGCTCCGATATGACCTATC 517356 Query 122479 AAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCT 122538 |||| |||||||| || || ||||| | || || || |||| |||||| | Sbjct 517355 CGAAGGGTTCCCGCTTGTAACAACCAAGCGAATCCATCTGAAATCAGTCATTCATGAGTT 517296 Query 122539 TCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 122598 | ||||| | | || ||||| || || |||||||| || || || | || Sbjct 517295 GTTATGGTTTTTGAGCGGGGATACGAATATATCCTATCTGAAGGAAAATGGTGTGAAGAT 517236 Query 122599 CTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||||||| ||||| || ||| ||||| || | || ||||| ||||| |||||||| Sbjct 517235 CTGGGATGATTGGGCTGACGAAAATGGTGATTTGGGTCCGGTATACGGATCTCAATGGCG 517176 Query 122659 T 122659 | Sbjct 517175 T 517175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777587752739200