Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 2e-14 >seq3 Length=592184 Score = 96.9 bits (106), Expect = 2e-14 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 474711 CATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 ||||||| || ||| |||||| | ||||| || || || ||||| || || ||||| Sbjct 402307 CATATCTGGGTCAAACGGTAACTCAAGCAGTTATCACGGTACCAGCTTACTTCAATGACA 402366 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 || ||||||||||| |||||||| || | ||| |||||||| | ||| | ||||| Sbjct 402367 GCCAGCGTCAAGCAACCAAAGATGCAGGTAAAATCGCAGGTCTGGAAGTTCTGCGTATCG 402426 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 | || || ||||| ||||| || | || || ||| | || || Sbjct 402427 TCAACGAGCCAACTGCAGCAGCTTTGGCATACGGTATGGAGAA 402469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267983942633696