Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2952 122 1e-22 seq78 89.7 6e-13 seq54 89.7 6e-13 >seq2952 Length=1496 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | ||||||||||| ||||| | || |||| |||| Sbjct 735 GCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC 794 Query 65056 AC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | ||||| || | ||||| || |||||||| || || Sbjct 795 CCTCGTGTTTCG-TCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTT 853 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 854 CTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCT 913 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| || || || || ||| || ||||| | ||| ||| || | |||| Sbjct 914 GAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCC 972 Query 65235 GC-TCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTG 65289 | | | | || ||| || | || || ||| | | ||||| |||||| Sbjct 973 TCATGTACTCGAAGTTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTG 1028 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || | ||||||| | | |||| | ||| | ||||| | || ||| Sbjct 1029 CGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATC 1088 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||||| | |||| | ||||||| |||| ||| | || || || || | Sbjct 1089 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 1148 Query 65410 CAAGTTGGGGTGCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | | |||||| || || | |||| |||||| || || |||| ||||| | | Sbjct 1149 TCACT--GGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1206 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || | || |||||||||||||| |||||||| || || || || Sbjct 1207 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 >seq78 Length=176444 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 |||| | || ||| | || ||||||||||| || || | || || || || ||||| Sbjct 72433 AGTGCTCGCTGATTTTGACTGAGGGTGATTCTGCCAAGGCACTGGCCGTGGCTGGTCTGG 72492 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTC 13724 | || ||||| |||||||| ||||||||||| || |||||||| ||| | ||| || | Sbjct 72493 CAGTGGTTGGACGTGATCAGTACGGTGTGTTTCCTCTTCGCGGCAAACTTCTGAACGTGC 72552 Query 13725 GGGACGCTTCGGTGGCACAGCT 13746 | || || | ||||| ||||| Sbjct 72553 GTGATGCGACTGTGGCGCAGCT 72574 >seq54 Length=68445 Score = 89.7 bits (98), Expect = 6e-13 Identities = 340/528 (64%), Gaps = 12/528 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || || ||| | || || || || | || |||||| || ||| |||||| Sbjct 21055 CCGGGTACAGGTAAAACCTTGCTTGCTCGTGCTGTTGCCGGTGAAGCAGGTGTACCATTC 20996 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | || | | |||| || || |||||||| ||||| ||||| | | Sbjct 20995 TTCAGCATT--TCCGGTTCTGACTTCGTTGAAATGTTTGTCGGTGTCGGTGCATCTCGTG 20938 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | || || | ||||||| || |||| |||||||| |||| || ||||| | Sbjct 20937 TACGTGACTTGTTTGAAAATGCGAAGAAAAACGCCCCATGTATCATCTTTATCGATGAAA 20878 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552 |||||||||| || || || | |||||| | | | ||||| | |||| Sbjct 20877 TTGATGCGGTAGGACGTCAGCGTGGTGCTGGTCTTGGTGGTGGTCACGACGAACGTGAAC 20818 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTG 175609 ||||| | || || | ||| || |||||||| || | |||||| || ||| Sbjct 20817 AAACACTCAACCAGTTGCTCGTTGAAATGGATGGTTTCGGAGCCAATGA---AGGTATTA 20761 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | | |||| || || || || | || || || || ||| | || || || || | Sbjct 20760 TCATCGTTGCAGCTACGAACCGTGCAGACATTCTGGACCCTGCCTTGCTGCGTCCAGGAC 20701 Query 175670 GTTTTGATCGCAAGATCCAAGTGGGTCTTCCAAGTGTGCGAGGTCGCAAGAAGATTTTGG 175729 ||||||| || | || |||| || || ||| ||||||| | | || || Sbjct 20700 GTTTTGACCGTCAAATTACGGTGGATCGCCCTGACGTGAGAGGTCGTGAAGCGGTTCTGA 20641 Query 175730 GAGTCCATGCCCGAGACAAG-AAGTTATCTGAAGATGTCAGTCTCGCGAGTATTGCCAAG 175788 ||| || | || ||||| | ||| | ||||||| | || | | ||||| ||| Sbjct 20640 AAGTACACTCACGCAACAAGCCACTTA-CCAAAGATGTGAAGCTGGACATCATTGCGAAG 20582 Query 175789 CAAACAACTGGATTCTCTGGTGCGGAGTTGGCAAACCTTCTCAATGAA 175836 | || || |||||||| ||||| || |||| ||| || || |||||| Sbjct 20581 CGTACTACGGGATTCTCCGGTGCAGATTTGGAAAATCTCCTGAATGAA 20534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596535655189760