Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_020877.1 Length=131332 Score E Sequences producing significant alignments: (Bits) Value seq44 147 2e-30 >seq44 Length=71862 Score = 147 bits (162), Expect = 2e-30 Identities = 395/589 (67%), Gaps = 19/589 (3%) Strand=Plus/Minus Query 125569 TCTT-TCACATTTGTATTCTAATTGCCTTCTAAACTCATAAAATCCTTGTTTTTGTATTG 125627 |||| ||||| ||||||| | ||| | ||||||||| | | ||| | |||| Sbjct 37898 TCTTCTCACACTTGTATTTCATTTGTCGGGTAAACTCATGCAGTTTTTGCCCTGCAATTG 37839 Query 125628 CTTTAGCTAAA-TGTCTATTCTTCATCATCCCTTTTACATTCAAATCTTCAATAACAATT 125686 |||| ||| || | || ||||||||||||||||| |||||||| ||||| || |||| Sbjct 37838 CTTT-GCTCAAGTATCGGTTCTTCATCATCCCTTTCACATTCAAGTCTTCCATCACAACG 37780 Query 125687 CTTCTAGGTTTGGTTTTCACGATAGAAGATGTTACTTGATGTAAATAGTTTTTACGAATA 125746 ||||| ||||||||| | || | |||| ||||||| | | || |||||| Sbjct 37779 GCGCTAGGCTTGGTTTTCGCTATCGCGTTTGTTGCTTGATGGATGTGATTGCCGCGAATA 37720 Query 125747 TTAGACAATCTTCGTTGTAGGAGTTTAATTTGTTTTTCTAGTTTTATGATATTGCAAGTT 125806 |||| | ||| || || || | ||| ||||| | ||||| || || || || Sbjct 37719 TTAGTTATTCTCCGATGAAGCAAACGAATGGAATTTTCGACTTTTACAATGTTACATGTC 37660 Query 125807 TTGAC-AAACGTACTCCCTTCTTTAtttttttGGTATTTGAAAGATACCTTACGTTGCAA 125865 || || ||||| | ||| ||| ||||| ||| |||||| ||| || || |||||||| Sbjct 37659 TTAACGAAACGGATTCC-TTCCTTATTCATTTCATATTTGCGAGAAACTTTGCGTTGCAA 37601 Query 125866 CCTACGTAATCGTTTTTCTAATTTTTTAACCTTTATTGTTTTATTAATATTACCATAAAT 125925 ||| || || ||||| || ||| | || ||| || || || || | |||| Sbjct 37600 CCTCCGCAAGCGTTTCTCAGTCTTTCTTACGGCGGCTGTCTTGTTGATGTT--CTTAAAG 37543 Query 125926 A--GTACCATCTGAACATACAGCTAACTCTTTTATCCCTAAATCAATACCTAAGGACTCG 125983 | | || | ||| || || | ||||| || |||| ||||||||| | | |||| Sbjct 37542 ACCATTCCGTTACTACAGACCGCCAGTTCTTTAATACCTACATCAATACCAATCGCCTCG 37483 Query 125984 TTGGTCAAATCTTCA-TATTTATTTTCTTCTTCTATAGAGATAC--TTATATACCAGTAT 126040 | | || |||| || || ||||| || | | ||| || |||||| || Sbjct 37482 TCCGACA---GTTCAGGGCTTTCTTGCTTCTGCTCAATACCTACGGATACATACCAATAC 37426 Query 126041 TTACCATCAAAAGTAATTCTAGGATTGTAGTACTTAGTGTCTAT--AGGTAGTTGTTCAG 126098 ||||| ||||| | | || |||||| |||||| || | || || |||||||||| Sbjct 37425 TTACCGTCAAATGATACTCGCGGATTGCTGTACTT-GT-CCGATTCTGGAAGTTGTTCAG 37368 Query 126099 AAGTTCTAACCCAACCTACCTTTTCTATTAGTACTTTTTTCTCTTTTAC 126147 ||||| ||||| |||| ||||| | || || || | ||||| || Sbjct 37367 AAGTTGCCACCCAGCCTATTTTTTCGAGTAAGACCTTACTGTCTTTGAC 37319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420114291816296