Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq109 122 3e-22 seq54 102 2e-16 seq50 100 8e-16 seq215 96.9 1e-14 >seq109 Length=49948 Score = 122 bits (134), Expect = 3e-22 Identities = 180/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| |||||||| || || || || ||||| |||||||| || || ||||| Sbjct 35974 CGGCGCTGGATATAACCTGTCTCAGCAGTCTTCACAGCCGTATCAATCAGTCCTTCACGA 35915 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||||| || || ||| | | ||| | || Sbjct 35914 CCACCCATGGCGTGGAAGAAGAACTCTTGAGGGGTCAGACCCTTCAGGTACGAGTTTTCG 35855 Query 302713 ACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 ||||||||||| |||||| | ||| || |||| |||| ||||| |||| | Sbjct 35854 ACGAAACCACGACTCTCGGGACCCAGATCATC---CTTGCCGTAGTGCGGCAGCGTCCGG 35798 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | | | || || ||||||||||| || || || |||||||| |||| || | ||| Sbjct 35797 TGGTTGAAACCATACGGGATACGCTTGCCTTCGACATTCTGCTGACCCACACAAGCAATA 35738 Query 302830 ATCTGCGAAATATT 302843 |||||||| ||||| Sbjct 35737 ATCTGCGAGATATT 35724 >seq54 Length=68445 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || || ||||||||||| || || || || | ||| || | |||| ||||| || || Sbjct 20865 CCTACCGCATCAATTTCATCGATAAAGATGATACATGGGGCGTTTTTCTTCGCATTTTCA 20924 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || | |||||| ||||| || | ||| ||| ||||||| || || |||||| || Sbjct 20925 AACAAGTCACGTACACGAGATGCACCGACACCGACAAACATTTCAACGAAGTCAGAACCG 20984 Query 289150 GATA-CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | |||| ||||| |||| |||||| || || || || | || || | || || Sbjct 20985 GAAATGCTGAA-GAATGGTACACCTGCTTCACCGGCAACAGCACGAGCAAGCAAGGTTTT 21043 Query 289209 ACCTGTTCCAGGTGGTCC 289226 |||||| || || || || Sbjct 21044 ACCTGTACCCGGAGGACC 21061 >seq50 Length=145882 Score = 100 bits (110), Expect = 8e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||| |||||||| || || | ||| | |||||| |||||||| Sbjct 41170 CCGTGAGAGATCAGACAATCGCGCTCCATCTCTCCCATACGCAAACCACCCTCGCGAGCA 41111 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 41110 CGACCCTCCATCGGCTGGCGCGTCAGCATCGTCACGGGACCACGCGAGCGCGAGTGGATC 41051 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 41050 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 40998 >seq215 Length=35674 Score = 96.9 bits (106), Expect = 1e-14 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || ||||||||||||||||| ||||||||| | || || || || || Sbjct 19619 CTTGATGGCCGAAGCAAGAGCACCAAGCGAGTCGCGGTCGAGGTAGTTCGTGGGCTCATC 19678 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || || |||| || ||||| |||||||| Sbjct 19679 AAGCACCAGGATGTGCGGGTTCAGCCACATGGCAGCTCCCAGCACAACCTTCACCTTCTG 19738 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | | ||| ||| Sbjct 19739 ACCACCAGACAGACCACGCATGCGCGAGTGCGTACCGAACTCAGCACCCAGGCCGAAGCA 19798 Query 354183 GTCGAGATGTTTCTGTAC 354200 |||||| || ||||| || Sbjct 19799 GTCGAGGTGCTTCTGCAC 19816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471731759918024