Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq2 143 4e-29 >seq2 Length=712559 Score = 143 bits (158), Expect = 4e-29 Identities = 205/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 99623 GTTCTTGGGTGTGCCGTTTAACATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACA 99682 |||| |||| |||| |||||||| || ||||| | |||| || ||| |||| || Sbjct 516962 GTTCCTGGGGCTGCCATTTAACATTGCCAGCTATGCATTGCTGACACATATGATTGCCCA 516903 Query 99683 GCAGGCGAATATGGCGGTGGGCGATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTC 99742 |||| || | | ||||| || ||| ||||| |||| || ||||| || | || || Sbjct 516902 GCAGTGTGATCTTGAAGTGGGAGAGTTCATCTGGTCCGGTGGGGATGTACACATCTACTC 516843 Query 99743 TAACCATCTGGAACAGGCACGTACTCAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCT 99802 |||||| ||||||| | || ||||| | ||| || || ||||||||||| Sbjct 516842 AAACCATGTGGAACAAGTGAAAACCCAGTTGGAGCGTGAACCATACGCATTGCCTAAGCT 516783 Query 99803 GATTATCAAACGTAAGCCGGACTCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGA 99862 | | ||||| ||||||||||| || || || || |||| ||| ||||||||||| | || Sbjct 516782 GGTCATCAAGCGTAAGCCGGATTCCATTTTTGATTATACGTTTGAAGATTTTGAGTTTGA 516723 Query 99863 AGGCTACGACCCACACCCGGCTATTAAAGCACCGGTGGCGATATGAGTA 99911 |||| | | || |||| ||||||||| ||| | || ||| |||| Sbjct 516722 GAACTACCAGCACCATCCGGGTATTAAAGCCCCGATTGCAGTATAAGTA 516674 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 ||||| |||||||| ||||| |||||||| ||| ||| || | || ||||| || Sbjct 517354 GAAGGGTTCCCGCTTGTAACAACCAAGCGAATCCATCTGAAATCAGTCATTCATGAGTTG 517295 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 | ||||| ||| || || || ||||| || ||||| || |||||||| | || Sbjct 517294 TTATGGTTTTTGAGCGGGGATACGAATATATCCTATCTGAAGGAAAATGGTGTGAAGATC 517235 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGG 99178 ||||| || ||||| ||| ||||||| || | |||||||||||||| Sbjct 517234 TGGGATGATTGGGCTGACGAAAATGGTGATTTGGGTCCGGTATACGG 517188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716596023366080