Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 7e-12 seq9 86.0 7e-12 seq34 84.2 2e-11 seq12 84.2 2e-11 >seq13 Length=206566 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 148131 CGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAA 148190 |||| ||||||| ||||||||||||| || | ||||||| | || ||||||| ||||||| Sbjct 206499 CGGGATGTAGCTCAGCTTGGTAGAGCACCTGGTTTGGGACCAGGGGGTCGCATGTTCAAA 206440 Query 148191 TCCTGCCACCCCGATTT 148207 || || || |||||||| Sbjct 206439 TCGTGTCATCCCGATTT 206423 >seq9 Length=227325 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 148131 CGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAA 148190 |||| ||||||| ||||||||||||| || | ||||||| | || ||||||| ||||||| Sbjct 68 CGGGATGTAGCTCAGCTTGGTAGAGCACCTGGTTTGGGACCAGGGGGTCGCATGTTCAAA 127 Query 148191 TCCTGCCACCCCGATTT 148207 || || || |||||||| Sbjct 128 TCGTGTCATCCCGATTT 144 >seq34 Length=81493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 148130 ACGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAA 148189 ||||| ||||||| ||||||||||||| || | ||||||| | || ||||||| |||||| Sbjct 151 ACGGGATGTAGCTCAGCTTGGTAGAGCACCTGGTTTGGGACCAGGGGGTCGCATGTTCAA 210 Query 148190 ATCCTGCCACCCCGAT 148205 ||| || || |||||| Sbjct 211 ATCGTGTCATCCCGAT 226 >seq12 Length=207890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 148127 TTTACGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTT 148186 || ||||| |||||| ||||||||||||| || | ||||||| | || ||||||| ||| Sbjct 20004 TTGACGGGACGTAGCTCAGCTTGGTAGAGCACCTGGTTTGGGACCAGGGGGTCGCATGTT 19945 Query 148187 CAAATCCTGCCACCCCGATTT 148207 |||||| || || |||||||| Sbjct 19944 CAAATCGTGTCATCCCGATTT 19924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549591126485440