Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_021558.1 Length=37644 Score E Sequences producing significant alignments: (Bits) Value seq10 158 3e-34 >seq10 Length=223028 Score = 158 bits (174), Expect = 3e-34 Identities = 214/298 (72%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 23282 ATTCTTATCGGGCGTTTAACCCGCGATCCAGAATTGAAATATACACCTTCCGGGGTGGCT 23341 ||| | || || || ||||| || || || || || ||||| || ||| || || Sbjct 111503 ATTTTGATTGGTCGGTTAACTCGTGACCCTGAGTTACGCTATACTCCAAACGGAGTTGCC 111444 Query 23342 GTCACCGTCTTTACACTTGCTGTAGATAGACCTTTTACAAATAA---CGGAGAGCGTGAA 23398 || || ||||| | || || |||||||||||||||| | | ||||| |||||| Sbjct 111443 GTAACTCAGTTTACTTTGGCAGTGGATAGACCTTTTACAAGTCAAGGGGGAGAACGTGAA 111384 Query 23399 GCGGATTTTATTCCCATCGTTGTTTGGAGACAACTCGCAGAGACGTGCGCCACATATTTA 23458 || |||||||| || ||||| |||| | ||| | ||||| ||||| |||| ||||| Sbjct 111383 GCAGATTTTATCCCGATCGTCACTTGGCGTCAATTAGCAGAAACGTGTGCCAATTATTTG 111324 Query 23459 CGGAAAGGCCGCCTAACTGCTGTAGAAGGACGAATTCAAACTCGTAACTATGAAAATAAC 23518 || ||||||||| || | || || ||||| |||||||| |||||| ||||| |||||| Sbjct 111323 CGTAAAGGCCGCTTAGCAGCAGTCGAAGGTCGAATTCAGGTTCGTAATTATGAGAATAAC 111264 Query 23519 GAAGGGCGAAGAATTTACGTGACAGAAGTTGTAGCAGATAACGTCCGATTCTTGGAAT 23576 || || | | | || || ||||||||| | || || || || || || || |||| Sbjct 111263 GAGGGAAAACGCGTCTATGTCACAGAAGTTATTGCTGACAATGTTCGTTTTTTAGAAT 111206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120332695064544