Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_022090.1 Length=134643 Score E Sequences producing significant alignments: (Bits) Value seq44 147 2e-30 >seq44 Length=71862 Score = 147 bits (162), Expect = 2e-30 Identities = 395/589 (67%), Gaps = 19/589 (3%) Strand=Plus/Minus Query 128880 TCTT-TCACATTTGTATTCTAATTGCCTTCTAAACTCATAAAATCCTTGTTTTTGTATTG 128938 |||| ||||| ||||||| | ||| | ||||||||| | | ||| | |||| Sbjct 37898 TCTTCTCACACTTGTATTTCATTTGTCGGGTAAACTCATGCAGTTTTTGCCCTGCAATTG 37839 Query 128939 CTTTAGCTAAA-TGTCTATTCTTCATCATCCCTTTTACATTCAAATCTTCAATAACAATT 128997 |||| ||| || | || ||||||||||||||||| |||||||| ||||| || |||| Sbjct 37838 CTTT-GCTCAAGTATCGGTTCTTCATCATCCCTTTCACATTCAAGTCTTCCATCACAACG 37780 Query 128998 CTTCTAGGTTTGGTTTTCACGATAGAAGATGTTACTTGATGTAAATAGTTTTTACGAATA 129057 ||||| ||||||||| | || | |||| ||||||| | | || |||||| Sbjct 37779 GCGCTAGGCTTGGTTTTCGCTATCGCGTTTGTTGCTTGATGGATGTGATTGCCGCGAATA 37720 Query 129058 TTAGACAATCTTCGTTGTAGGAGTTTAATTTGTTTTTCTAGTTTTATGATATTGCAAGTT 129117 |||| | ||| || || || | ||| ||||| | ||||| || || || || Sbjct 37719 TTAGTTATTCTCCGATGAAGCAAACGAATGGAATTTTCGACTTTTACAATGTTACATGTC 37660 Query 129118 TTGAC-AAACGTACTCCCTTCTTTAtttttttGGTATTTGAAAGATACCTTACGTTGCAA 129176 || || ||||| | ||| ||| ||||| ||| |||||| ||| || || |||||||| Sbjct 37659 TTAACGAAACGGATTCC-TTCCTTATTCATTTCATATTTGCGAGAAACTTTGCGTTGCAA 37601 Query 129177 CCTACGTAATCGTTTTTCTAATTTTTTAACCTTTATTGTTTTATTAATATTACCATAAAT 129236 ||| || || ||||| || ||| | || ||| || || || || | |||| Sbjct 37600 CCTCCGCAAGCGTTTCTCAGTCTTTCTTACGGCGGCTGTCTTGTTGATGTT--CTTAAAG 37543 Query 129237 A--GTACCATCTGAACATACAGCTAACTCTTTTATCCCTAAATCAATACCTAAGGACTCG 129294 | | || | ||| || || | ||||| || |||| ||||||||| | | |||| Sbjct 37542 ACCATTCCGTTACTACAGACCGCCAGTTCTTTAATACCTACATCAATACCAATCGCCTCG 37483 Query 129295 TTGGTCAAATCTTCA-TATTTATTTTCTTCTTCTATAGAGATAC--TTATATACCAGTAT 129351 | | || |||| || || ||||| || | | ||| || |||||| || Sbjct 37482 TCCGACA---GTTCAGGGCTTTCTTGCTTCTGCTCAATACCTACGGATACATACCAATAC 37426 Query 129352 TTACCATCAAAAGTAATTCTAGGATTGTAGTACTTAGTGTCTAT--AGGTAGTTGTTCAG 129409 ||||| ||||| | | || |||||| |||||| || | || || |||||||||| Sbjct 37425 TTACCGTCAAATGATACTCGCGGATTGCTGTACTT-GT-CCGATTCTGGAAGTTGTTCAG 37368 Query 129410 AAGTTCTAACCCAACCTACCTTTTCTATTAGTACTTTTTTCTCTTTTAC 129458 ||||| ||||| |||| ||||| | || || || | ||||| || Sbjct 37367 AAGTTGCCACCCAGCCTATTTTTTCGAGTAAGACCTTACTGTCTTTGAC 37319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430708904021088