Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_022761.1 Length=146193 Score E Sequences producing significant alignments: (Bits) Value seq13 82.4 7e-11 >seq13 Length=206566 Score = 82.4 bits (90), Expect = 7e-11 Identities = 320/488 (66%), Gaps = 29/488 (6%) Strand=Plus/Plus Query 36685 ACGCATGGATCTTGTTAAGAAAGCATATTGGGTTCTCAGTAATCTTTACATTACTGTAGC 36744 ||| |||||||| |||||| |||| || |||| | || || | ||||| || | ||| Sbjct 4372 ACGTATGGATCTCGTTAAGGAAGCTTACTGGGCAATGAGCAACATGTACATGACAGCAGC 4431 Query 36745 TACACCCACAATGGGGAATGCAGGTAGACCAGATGGTCAGTTAAG-CTCG---TGTTTCA 36800 |||||| || ||| ||||| || | | || ||| | | || ||| || |||| Sbjct 4432 TACACCTACGATGTCCAATGCGGGCAAAAAAG-TGGCCGGACAACTCTCCAGCTGCTTCA 4490 Query 36801 TTGGAACAGTAGAAGATTCCCTAGACAATATCTATGATAATAACAAAGATTCAGCTATGG 36860 ||| || || || |||||||| || |||| ||| |||| ||| ||| | Sbjct 4491 TTGATACCGTGGATGATTCCCTTGAGGGCATCTTCGATTCCAACACTGATGTAGCAC--G 4548 Query 36861 TGTCT--AAGTTTGGTGGGGGTATCGGGGTTTACATGGGTAAAATCCGTTCACTCAA--C 36916 | || || | || ||||| ||||| |||||| | |||||| || | | | | | Sbjct 4549 TCTCAGCAAAATGGGCGGGGGCATCGGCGTTTACCTCGGTAAAGTCAGAGCTCGCGGTTC 4608 Query 36917 AGTTACATCCGTGGTATGAAAGGTA-AGTCTCAAGGTGTTATCCCTTGGAT---CAAAGG 36972 || ||||||| ||| ||| || | ||| || || || |||||||| | || Sbjct 4609 AG--ACATCCGGGGTCACAAAAATACAAGCTCT-GGCGTAATTCCTTGGATTCGCCAA-- 4663 Query 36973 GCTTGAAAATACAGCAAATAGTGTAGACCAGCTAGGTCAGCGTAAAGGTGCTATTGCAGT 37032 || | ||||| || || ||||||||||| || ||||||||||| || || || Sbjct 4664 -CTAAATAATACTGCGGTCAGCGTAGACCAGCTTGGAACACGTAAAGGTGCGATCGCCGT 4722 Query 37033 TTACCTAGACATCTGGCATAAGGATGTTATGGAATTCCTGCAAATTGGTACT-AATAACG 37091 ||| || ||| | | || || || | ||| ||||| | | || || || || | Sbjct 4723 TTATCTGGACGTTTTCCACAAAGACATCTTGGCCTTCCT-CGATCTGAAGCTGAACAATG 4781 Query 37092 GGGATGA---GAGACGTAAAGCACGTGACGTATTCCCAGGCTTATGTGTACCAGACCTTT 37148 | || || || ||| || | ||||||||||| ||| | || | || ||||| | Sbjct 4782 GTGACGAGCGGATGCGT---GCGCATGACGTATTCCACGGCATTTGCCTGCCTGACCTGT 4838 Query 37149 TCATGGAG 37156 |||||||| Sbjct 4839 TCATGGAG 4846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467662988461760