Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_022767.1 Length=81656 Score E Sequences producing significant alignments: (Bits) Value seq13 149 3e-31 >seq13 Length=206566 Score = 149 bits (164), Expect = 3e-31 Identities = 404/614 (66%), Gaps = 26/614 (4%) Strand=Plus/Minus Query 63341 CGAAGTATTCACCTGTTTCCCATTCAGAACCTTCGAATAATGGATATTCTTCTTTCTCTT 63400 ||||||||| ||||||| ||| || ||||||| |||| ||||| | | |||| || | Sbjct 5636 CGAAGTATTTGCCTGTTTGCCAATCGGAACCTTGGAATTTCGGATAATGTCCTTTTTCCT 5577 Query 63401 TCGCCAATTTCATACTAGCTTTGATGGTATAATAAGCAATATCTTCGTACAAACTATCGT 63460 | | || | ||| || ||||| | | ||| ||| | ||| |||| | |||||| Sbjct 5576 TGGACAGCTCCATGCTGGCTTTCACGAGCAGATAGTTAATTTTTTCATACAGATTATCGT 5517 Query 63461 TAAAATCTACTGCTTCTTGTGTTTCCCATCTGATCTTTTTCTGAACAAGTAGATCGTGTA 63520 || | |||||||||| | |||||| | || || || |||| || | || | Sbjct 5516 TATATGTGACTGCTTCTTCCGATTCCCAACGAATGCCTTCGAGAGCAAGCAGGTGATGGA 5457 Query 63521 GACCATATGTTCCTAAACCAATAGCACGGTAACGTTTGTTAGTGTATT----TAGCAACA 63576 | || ||||||| | ||||| |||||||| | |||| ||||||| | ||| || Sbjct 5456 GTCCGAATGTTCCCAGACCAACCGCACGGTATTGGCTGTTGGTGTATTGGGCTTGCAGCA 5397 Query 63577 GCTAAAGGTAAATCGTTAAGATCGATAACGTTATCCAGCATACGAACCTGGATGTTAATT 63636 | || || ||| | ||||| ||||| ||||||||||||||||| || | Sbjct 5396 CTTCAATGTT----GTTGATGTCGATTACGTTGTCCAGCATACGAACCTGAATCGGTACC 5341 Query 63637 AATCGTTCTAACACATCATCAGTAACAGCACGAGCTAAGTTAATGGAAGACAAGTTACAT 63696 || || || || ||||||| || || ||||| || |||| |||||| || ||| || Sbjct 5340 AAACGCTCCAATACATCATGAGGCACGGCACGTGCCAAGTGAATGGAGTTCAGGTTGCAG 5281 Query 63697 ACTACCATATCACCTAATACTTT----TTCTTGAGTC--GAACGGCC-TGTTT--TT--- 63744 ||||| | ||| || ||||| || || | | | || | ||| || Sbjct 5280 ACTACGAAATCGCCCGGCACTTTGGAAATCACGATGCGGGTTTGTCCATCTTTGGTTACG 5221 Query 63745 AGGTCTAATTTTTCATCAAGGTAATAAGTTTGTGATTGGTTTTGTGTAATTTCTGTACAT 63804 || ||| ||||||| | | |||| |||||||| || | ||||| ||||| Sbjct 5220 AGCTCTTCTTTTTCAACTA------CAGTTGCAGATTGGTTCTGCATGATTTCGGTACAA 5167 Query 63805 AAGTTAGAGCAGTAAATCATACCTTTATGTTTTTGTGAGTTCTCACGGTTAACTTGGTCA 63864 | ||| || |||| | ||| || | | | | |||| |||||| || || Sbjct 5166 AGGTTGGAAGAGTATACCATGCCGTGTGCACTGTTCGGGTTCGAACGGTTGACGGTATCC 5107 Query 63865 CGATAGAACATATATGGTGTACCTGTTTCCAATTGAGAACGCATGATACCCTTCATAATG 63924 || || ||||| || || ||||| ||||||| || || ||||| | ||||||||| Sbjct 5106 CGGTAAAACATGTAAGGCGTACCCGTTTCCAGCTGGGATTTCATGACGCGTTTCATAATG 5047 Query 63925 TCAATAGCAGGAAC 63938 ||||| || |||| Sbjct 5046 TCAATCGCCTGAAC 5033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261159910697224