Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_022774.1 Length=80382 Score E Sequences producing significant alignments: (Bits) Value seq13 107 1e-18 >seq13 Length=206566 Score = 107 bits (118), Expect = 1e-18 Identities = 256/384 (67%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 61317 CGAAATATTCACCTGTTTCCCATTCAGAACCTTCAAACAGTGGATATTCTTCTTTTTCCT 61376 |||| |||| ||||||| ||| || ||||||| || ||||| | | ||||||||| Sbjct 5636 CGAAGTATTTGCCTGTTTGCCAATCGGAACCTTGGAATTTCGGATAATGTCCTTTTTCCT 5577 Query 61377 TCGCTAATTCCATTGAAGCTTTGATGGTATAATAAGCAATATCTTCGTATAAACTATCAT 61436 | | | ||||| ||||| | | ||| ||| | ||| || | | |||| | Sbjct 5576 TGGACAGCTCCATGCTGGCTTTCACGAGCAGATAGTTAATTTTTTCATACAGATTATCGT 5517 Query 61437 TGAAATCT-ACAGCTTCTTGACTTTCCCATCTGATCTTTTTCTGAACAAGTAGATCATGT 61495 | | || | || ||||||| |||||| | || || || |||| || | ||| Sbjct 5516 T-ATATGTGACTGCTTCTTCCGATTCCCAACGAATGCCTTCGAGAGCAAGCAGGTGATGG 5458 Query 61496 AGACCATATGTTCCCAAACCAATAGCGCGGTAACGATGGTTAGTGTATT----TTGCAAC 61551 || || ||||||||| ||||| || ||||| | ||| ||||||| ||||| | Sbjct 5457 AGTCCGAATGTTCCCAGACCAACCGCACGGTATTGGCTGTTGGTGTATTGGGCTTGCAGC 5398 Query 61552 AGCTAAAGGTAAGTCATTAAGATCGATAACATTGTCCAGCATGCGAACTTGAATCGGAAT 61611 | | || || | || ||||| || ||||||||||| ||||| |||||||| | Sbjct 5397 ACTTCAATGTTGTTGATG----TCGATTACGTTGTCCAGCATACGAACCTGAATCGGTAC 5342 Query 61612 TAATCTTTCTAACACGTCATCAGTAACAGCACGAGCTAAATTAATGGAAGACAAGTTACA 61671 || | || || || |||| || || ||||| || || | |||||| || ||| || Sbjct 5341 CAAACGCTCCAATACATCATGAGGCACGGCACGTGCCAAGTGAATGGAGTTCAGGTTGCA 5282 Query 61672 TACTACCATATCACCTAACACTTT 61695 ||||| | ||| || |||||| Sbjct 5281 GACTACGAAATCGCCCGGCACTTT 5258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 257083336867896