Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_022918.1 Length=132123 Score E Sequences producing significant alignments: (Bits) Value seq44 219 4e-52 >seq44 Length=71862 Score = 219 bits (242), Expect = 4e-52 Identities = 695/1058 (66%), Gaps = 31/1058 (3%) Strand=Plus/Plus Query 72311 GTACTAAGAAAAGAAATTACTCAACTAAAGAAAACTGAAGAATTTAATTGGTTAAATGAA 72370 ||||| |||||||| | || ||||| ||| | ||||||| | |||| | | || Sbjct 37115 GTACTGAGAAAAGAGTTGACGCAACTCAAGCAGCGAGAAGAATATGCTTGGCTGTACGAT 37174 Query 72371 GTAAGTAACAATGTACCTAAACAAGCTGTCAAAGATGCTTGTAATTCTTATAAGAGATTT 72430 || ||||||||| | |||||||| || ||||||||||| || | || |||| | Sbjct 37175 GTTTCCAACAATGTAGCAAAACAAGCCGTAAAAGATGCTTGCGATGCCTACAAGAAGATG 37234 Query 72431 TTTAAAGGGCAAGCTAAATTTCCTAAGTTTAA-ATctaaaaagaaaactaaacctagttt 72489 || ||||| ||| | || || ||||| || ||| || ||| | ||||| || Sbjct 37235 TTCAAAGGACAATCCAAGAAACCGAAGTTCAAGATC-AAGAAGCGCTCCAAACCAGCGTT 37293 Query 72490 ctacaatgatacacaaaaattaaaggtaaaagaaaaaCTAGTATTACTAGAAAAAGTAGG 72549 |||||| |||||| || || ||||| ||||| | || ||||| |||||| |||| Sbjct 37294 CTACAACGATACAGTCAAGTTCAAGGTCAAAGACAGTAAGGTCTTACTCGAAAAAATAGG 37353 Query 72550 ATGGGTTAGGACTTCTGAACAATTACCT--ATAGATACAAAATATTATAATCCAAGAATT 72607 ||||| |||||||||||| | || || | |||| || ||||| || | Sbjct 37354 CTGGGTGGCAACTTCTGAACAACTTCCAGAATCGG-ACAAG-TACAGCAATCCGCGAGTA 37411 Query 72608 ACATTTGATGGTAAGTATTGGTATCTAAGTGTTTCCATAGA--AGAAGAAAATAAATA-T 72664 ||||||| ||||||||||||||| || || || || ||||| || || | Sbjct 37412 TCATTTGACGGTAAGTATTGGTATGTATCCGTAGGTATTGAGCAGAAGCAAGAAAGCCCT 37471 Query 72665 GAAAAATTAACAGAAGAATCTTTAGGAATTGACTTAGGAATAAAAGAATTAGCTATATGT 72724 ||| | | || || | | || ||||| |||| || |||||| | || | ||| Sbjct 37472 GAACTGT---CGGACGAGGCGATTGGTATTGATGTAGGTATTAAAGAACTGGCGGTCTGT 37528 Query 72725 TCAGATGGAACCATTTATGGTAATATTAATaaaacagtaaaagttaaaaagttagaaaaa 72784 | |||| | | | || || || || |||| || | |||| || ||| Sbjct 37529 AGTAACGGAATGGTCTTTAAGAACATCAACAAGACAGCCGCCGTAAGAAAGACTGAGAAA 37588 Query 72785 aGATTACGTAGATTGCAACGTAAGGTATCTCGTAAATACCAAAACAATAAAGAAGGGAGT 72844 | || || || |||||||| || || ||||| ||||| ||| ||||| ||||| | | Sbjct 37589 CGCTTGCGGAGGTTGCAACGCAAAGTTTCTCGCAAATATGAAATGAATAAGGAAGGAA-T 37647 Query 72845 ACGTTT-GTCAAAACTTGTAATATTATAAAACTTGAAAAACAAATTAAACTCTTACAACG 72903 ||||| || || || ||||| ||| ||||| | ||||| ||| | | || || Sbjct 37648 CCGTTTCGTTAAGACATGTAACATTGTAAAAGTCGAAAATTCCATTCGTTTGCTTCATCG 37707 Query 72904 AAGATTGTCTAACATCCGTAAAAATCATTTACATCAAACAACAACTTCTATTGTGAAAAC 72963 ||| | |||| || || ||||| | |||||| |||||| | || | |||||| Sbjct 37708 GAGAATAACTAATATTCGCGGCAATCACATCCATCAAGCAACAAACGCGATAGCGAAAAC 37767 Query 72964 CAAACCTAGAAGAATTGTTATAGAAGATTTGAATGTAAGTGGTATGATGAAAAATAGACA 73023 ||| ||||| |||| || ||||| |||||||| | || |||||||| || || | Sbjct 37768 CAAGCCTAGCGCCGTTGTGATGGAAGACTTGAATGTGAAAGGGATGATGAAGAACCGATA 37827 Query 73024 TCT-AGCTAAAGCAATACAAAAACAGAGTTTTTATGAATTTAGAAGACAATTAGAATACA 73082 | ||| |||||||| | || | | |||| |||| ||||| | |||||| Sbjct 37828 CTTGAGC-AAAGCAATTGCAGGGCAAAAACTGCATGAGTTTACCCGACAAATGAAATACA 37886 Query 73083 AGTGT-AAAAGAAAAG-GTATCGAACTTATTACTGCTGATAGGTTTTTCCCGTCAAGTAA 73140 ||||| | |||| | | | | | |||| || || |||| ||| | ||| || Sbjct 37887 AGTGTGAGAAGATAGGCGCAAGG--TTTATCCAAGCCGACAGGTGGTTCTCTTCATCGAA 37944 Query 73141 AACATGTTCTAGTTGTGGAATTATTAATAAAAACTTAAAACTTTCAGATAGAGTATTTAA 73200 | ||||| ||||||| || || ||| |||| ||| | || ||| | || | | Sbjct 37945 ATTGTGTTCGTGTTGTGGGCGAATCAAGAAAGACTTGAAATTATCTGATCGTACATATGA 38004 Query 73201 CTGTGAGTGTGGATTTAGTATTGATAGAGACTTTAATGCTAGTGTTAATTTAGCTAATTA 73260 || || || ||||| | |||||| |||| | || || | |||||| ||| Sbjct 38005 ATGCGATTGCGGATTAATTATTGACCGAGATATGAACGCGGCAATCAATTTATCTA---- 38060 Query 73261 TAATATTTAGACTATCACTAACAAGATA---CTAAGTATATGTACCTTTCGTTGTATGGG 73317 ||| | || |||| ||| | || ||| ||||||| |||||||||| | Sbjct 38061 -AATTGGCGAATTAACACTTACACGTTATCGCTA---ATATGTAGGATTCGTTGTATCCG 38116 Query 73318 AATTTACGCCTTTGGAGTATTATAGCAAACTTGAGTAG 73355 |||||||||| ||||||| ||||| ||||| ||||| Sbjct 38117 AATTTACGCCCTTGGAGTGTTATATCAAACAAAAGTAG 38154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422645351391648