Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_022920.1 Length=139738 Score E Sequences producing significant alignments: (Bits) Value seq44 219 4e-52 >seq44 Length=71862 Score = 219 bits (242), Expect = 4e-52 Identities = 695/1058 (66%), Gaps = 31/1058 (3%) Strand=Plus/Plus Query 67444 GTACTAAGAAAAGAAATTACTCAACTAAAGAAAACTGAAGAATTTAATTGGTTAAATGAA 67503 ||||| |||||||| | || ||||| ||| | ||||||| | |||| | | || Sbjct 37115 GTACTGAGAAAAGAGTTGACGCAACTCAAGCAGCGAGAAGAATATGCTTGGCTGTACGAT 37174 Query 67504 GTAAGTAACAATGTACCTAAACAAGCTGTCAAAGATGCTTGTAATTCTTATAAGAGATTT 67563 || ||||||||| | |||||||| || ||||||||||| || | || |||| | Sbjct 37175 GTTTCCAACAATGTAGCAAAACAAGCCGTAAAAGATGCTTGCGATGCCTACAAGAAGATG 37234 Query 67564 TTTAAAGGGCAAGCTAAATTTCCTAAGTTTAA-ATctaaaaagaaaactaaacctagttt 67622 || ||||| ||| | || || ||||| || ||| || ||| | ||||| || Sbjct 37235 TTCAAAGGACAATCCAAGAAACCGAAGTTCAAGATC-AAGAAGCGCTCCAAACCAGCGTT 37293 Query 67623 ctacaatgatacacaaaaattaaaggtaaaagaaaaaCTAGTATTACTAGAAAAAGTAGG 67682 |||||| |||||| || || ||||| ||||| | || ||||| |||||| |||| Sbjct 37294 CTACAACGATACAGTCAAGTTCAAGGTCAAAGACAGTAAGGTCTTACTCGAAAAAATAGG 37353 Query 67683 ATGGGTTAGGACTTCTGAACAATTACCT--ATAGATACAAAATATTATAATCCAAGAATT 67740 ||||| |||||||||||| | || || | |||| || ||||| || | Sbjct 37354 CTGGGTGGCAACTTCTGAACAACTTCCAGAATCGG-ACAAG-TACAGCAATCCGCGAGTA 37411 Query 67741 ACATTTGATGGTAAGTATTGGTATCTAAGTGTTTCCATAGA--AGAAGAAAATAAATA-T 67797 ||||||| ||||||||||||||| || || || || ||||| || || | Sbjct 37412 TCATTTGACGGTAAGTATTGGTATGTATCCGTAGGTATTGAGCAGAAGCAAGAAAGCCCT 37471 Query 67798 GAAAAATTAACAGAAGAATCTTTAGGAATTGACTTAGGAATAAAAGAATTAGCTATATGT 67857 ||| | | || || | | || ||||| |||| || |||||| | || | ||| Sbjct 37472 GAACTGT---CGGACGAGGCGATTGGTATTGATGTAGGTATTAAAGAACTGGCGGTCTGT 37528 Query 67858 TCAGATGGAACCATTTATGGTAATATTAATaaaacagtaaaagttaaaaagttagaaaaa 67917 | |||| | | | || || || || |||| || | |||| || ||| Sbjct 37529 AGTAACGGAATGGTCTTTAAGAACATCAACAAGACAGCCGCCGTAAGAAAGACTGAGAAA 37588 Query 67918 aGATTACGTAGATTGCAACGTAAGGTATCTCGTAAATACCAAAACAATAAAGAAGGGAGT 67977 | || || || |||||||| || || ||||| ||||| ||| ||||| ||||| | | Sbjct 37589 CGCTTGCGGAGGTTGCAACGCAAAGTTTCTCGCAAATATGAAATGAATAAGGAAGGAA-T 37647 Query 67978 ACGTTT-GTCAAAACTTGTAATATTATAAAACTTGAAAAACAAATTAAACTCTTACAACG 68036 ||||| || || || ||||| ||| ||||| | ||||| ||| | | || || Sbjct 37648 CCGTTTCGTTAAGACATGTAACATTGTAAAAGTCGAAAATTCCATTCGTTTGCTTCATCG 37707 Query 68037 AAGATTGTCTAACATCCGTAAAAATCATTTACATCAAACAACAACTTCTATTGTGAAAAC 68096 ||| | |||| || || ||||| | |||||| |||||| | || | |||||| Sbjct 37708 GAGAATAACTAATATTCGCGGCAATCACATCCATCAAGCAACAAACGCGATAGCGAAAAC 37767 Query 68097 CAAACCTAGAAGAATTGTTATAGAAGATTTGAATGTAAGTGGTATGATGAAAAATAGACA 68156 ||| ||||| |||| || ||||| |||||||| | || |||||||| || || | Sbjct 37768 CAAGCCTAGCGCCGTTGTGATGGAAGACTTGAATGTGAAAGGGATGATGAAGAACCGATA 37827 Query 68157 TCT-AGCTAAAGCAATACAAAAACAGAGTTTTTATGAATTTAGAAGACAATTAGAATACA 68215 | ||| |||||||| | || | | |||| |||| ||||| | |||||| Sbjct 37828 CTTGAGC-AAAGCAATTGCAGGGCAAAAACTGCATGAGTTTACCCGACAAATGAAATACA 37886 Query 68216 AGTGT-AAAAGAAAAG-GTATCGAACTTATTACTGCTGATAGGTTTTTCCCGTCAAGTAA 68273 ||||| | |||| | | | | | |||| || || |||| ||| | ||| || Sbjct 37887 AGTGTGAGAAGATAGGCGCAAGG--TTTATCCAAGCCGACAGGTGGTTCTCTTCATCGAA 37944 Query 68274 AACATGTTCTAGTTGTGGAATTATTAATAAAAACTTAAAACTTTCAGATAGAGTATTTAA 68333 | ||||| ||||||| || || ||| |||| ||| | || ||| | || | | Sbjct 37945 ATTGTGTTCGTGTTGTGGGCGAATCAAGAAAGACTTGAAATTATCTGATCGTACATATGA 38004 Query 68334 CTGTGAGTGTGGATTTAGTATTGATAGAGACTTTAATGCTAGTGTTAATTTAGCTAATTA 68393 || || || ||||| | |||||| |||| | || || | |||||| ||| Sbjct 38005 ATGCGATTGCGGATTAATTATTGACCGAGATATGAACGCGGCAATCAATTTATCTA---- 38060 Query 68394 TAATATTTAGACTATCACTAACAAGATA---CTAAGTATATGTACCTTTCGTTGTATGGG 68450 ||| | || |||| ||| | || ||| ||||||| |||||||||| | Sbjct 38061 -AATTGGCGAATTAACACTTACACGTTATCGCTA---ATATGTAGGATTCGTTGTATCCG 38116 Query 68451 AATTTACGCCTTTGGAGTATTATAGCAAACTTGAGTAG 68488 |||||||||| ||||||| ||||| ||||| ||||| Sbjct 38117 AATTTACGCCCTTGGAGTGTTATATCAAACAAAAGTAG 38154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447008163788160