Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_022980.1 Length=45798 Score E Sequences producing significant alignments: (Bits) Value seq11 82.4 2e-11 >seq11 Length=216871 Score = 82.4 bits (90), Expect = 2e-11 Identities = 201/305 (66%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 9674 GATACCATTTCTGGACAAGAAGCAAGGGCTTACGCAACGATCAATGGTCGTGTAGAAGAA 9733 || || || || || || |||| | || ||||||||||| || || | |||||| Sbjct 11073 GACACGATCTCCGGCCAGGAAGGCCGCGCATACGCAACGATTAACGGACAGACGGAAGAA 11014 Query 9734 ATGTTTTATGCaaaaaaattagaagctaaggtaaaaaagaaaaagaaagCCATTAATACA 9793 ||||| |||| || | | | ||||| | ||| | ||| |||| || |||| || Sbjct 11013 ATGTTCTATGTGAAGACACTTGAAGCAACTGTAGAGAAGCAAAAAGCAGAGGTTAAAACC 10954 Query 9794 CTTGGTGCGCGAGGTTCTCAAAGTAAAGCGACAGGCTGGGAAGGCTCAGGGAGTATGCAA 9853 || ||| |||||| || ||||| ||||| ||| ||||| || ||| | Sbjct 10953 CTCGGTCGTCGAGGTGTACAGCACAAAGCAACAGGTTGGTCTGGCTCGGGTTCCATGACA 10894 Query 9854 ATTTACTATACTACCACCTTGTTCCGTCAAATGATGTTGGAATACATGAAAACAGGGAAA 9913 || | ||||| || || |||||| | ||||| | |||||||| | | || Sbjct 10893 ATCTTTTATACCACATCCCGTTTCCGTGAGTTGATGCTTCAATACATGCAGAATGGCGTC 10834 Query 9914 GATACTTACTTTGATATCCAAGTAGTCAATGAAGATGAGAACTCAACCATAGGCAAACAA 9973 ||||||||||| || || |||| ||| |||||| || ||||| |||||||| Sbjct 10833 GATACTTACTTCGACATTGAAGTGACCAACGAAGATCCTTCGTCTACCATTGGCAAACAG 10774 Query 9974 ACAGT 9978 || || Sbjct 10773 ACTGT 10769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146424084618240