Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_023007.1 Length=168876 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=712559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 213/320 (67%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 67769 CAGTTATCACGTTTCGGTGGTGGAGTAGGTGTTAACCTTTCTAAGATTCGTGCTAGTGGA 67828 |||||||| ||||||||||||| | ||| ||||| || ||| | |||||| ||||| Sbjct 468151 CAGTTATCCAAAATCGGTGGTGGAGTGGCTGTCAACCTGTCGAAGTTGCGTGCTCGTGGA 468210 Query 67829 GAGCCAATCAAAGGTGTTGAAGGTGCATCATCTGGTGTTATCGGTGTTGCGAAGCTACTA 67888 || || |||||||| ||||| || | || ||| |||| ||||| | Sbjct 468211 GAAGTCATTAAAGGTGTCGAAGGGGCTGCTAAAGGCATTACGCCTGTTCTCAAGCTGATG 468270 Query 67889 GAAGATACATTCTCTCACTTCAATCAGTTGGGTCAACGTAGTGGAAGCGGTGTAGCATAC 67948 || ||| ||||| || | ||||| |||||||||| | || |||| |||||| Sbjct 468271 GAGGATGGTTTCTCCTACGCCGATCAGATGGGTCAACGGAAAGGTTCTGGTGCTGCATAC 468330 Query 67949 TTGAATATTTTCCATGATGATATTCTTGAGTTTTTAGACACAAAACAAATCAACGTGGAT 68008 | |||||||| | || || | || | | || | ||| | ||||| | |||| Sbjct 468331 TATAATATTTTTGGTTGGGACGTTATGGAACTGCTGGATAGCAAAAAGATCAATGCGGAT 468390 Query 68009 GAGAAGAAGCGTTTGAAAACATTATCAATCGGTGTAATTGCCCCAGATAAATTCTTTGAA 68068 ||||| | || | ||||| | || ||||| | |||| || || |||| | || Sbjct 468391 GAGAAAATCCGACTAAAAACTCTCTCTATCGGGCTTATTGTTCCTAATCGTTTCTATAAA 468450 Query 68069 CTTGCTGAAAAGAATGAGCC 68088 || ||| || | |||||||| Sbjct 468451 CTGGCTCAAGATAATGAGCC 468470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540244458341120