Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_023573.1 Length=142094 Score E Sequences producing significant alignments: (Bits) Value seq44 210 2e-49 >seq44 Length=71862 Score = 210 bits (232), Expect = 2e-49 Identities = 692/1057 (65%), Gaps = 29/1057 (3%) Strand=Plus/Plus Query 63038 GTACTAAGAAAAGAAATTACTCAACTAAAGAAAACTGAAGAATTTAATTGGTTAAATGAA 63097 ||||| |||||||| | || ||||| ||| | ||||||| | |||| | | || Sbjct 37115 GTACTGAGAAAAGAGTTGACGCAACTCAAGCAGCGAGAAGAATATGCTTGGCTGTACGAT 37174 Query 63098 GTAAGTAACAATGTACCTAAACAAGCAATTAAAGATGCTTGTAATTCTTACAAAAGGTTT 63157 || ||||||||| | |||||||| | ||||||||||| || | ||||| | | | Sbjct 37175 GTTTCCAACAATGTAGCAAAACAAGCCGTAAAAGATGCTTGCGATGCCTACAAGAAGATG 37234 Query 63158 TTTAAAGGACAAGCTAAATTTCCTAAGTTTAA-ATctaaaaagaaaactaaacctagttt 63216 || ||||||||| | || || ||||| || ||| || ||| | ||||| || Sbjct 37235 TTCAAAGGACAATCCAAGAAACCGAAGTTCAAGATC-AAGAAGCGCTCCAAACCAGCGTT 37293 Query 63217 ctacaatgatacacaaaaattaaaggtaaaagaaaaaCTAGTATTACTAGAAAAAGTAGG 63276 |||||| |||||| || || ||||| ||||| | || ||||| |||||| |||| Sbjct 37294 CTACAACGATACAGTCAAGTTCAAGGTCAAAGACAGTAAGGTCTTACTCGAAAAAATAGG 37353 Query 63277 ATGGGTTAGGACTTCTGAACAATTACC--TATAGATACAAAATATTATAATCCAAGAATT 63334 ||||| |||||||||||| | || || | || || || ||||| || | Sbjct 37354 CTGGGTGGCAACTTCTGAACAACTTCCAGAATCG-GAC-AAGTACAGCAATCCGCGAGTA 37411 Query 63335 ACATTTGATGGTAAGTATTGGTATCTAAGTGTTTCCAT--AGAAGAAG-AAAATAAATAT 63391 ||||||| ||||||||||||||| || || || || ||||| || | | | Sbjct 37412 TCATTTGACGGTAAGTATTGGTATGTATCCGTAGGTATTGAGCAGAAGCAAGAAAGCCCT 37471 Query 63392 GAAAAATTAACAGAAGAATCTTTAGGAATTGACTTAGGAATAAAAGAATTAGCTATATGT 63451 | || | | || || | | || ||||| |||| || |||||| | || | ||| Sbjct 37472 G---AACTGTCGGACGAGGCGATTGGTATTGATGTAGGTATTAAAGAACTGGCGGTCTGT 37528 Query 63452 TCAGATGGAACCATTTATGGTAATATTAATaaaacagtaaaagttaaaaagttagaaaaa 63511 | |||| | | | || || || || |||| || | |||| || ||| Sbjct 37529 AGTAACGGAATGGTCTTTAAGAACATCAACAAGACAGCCGCCGTAAGAAAGACTGAGAAA 37588 Query 63512 aGATTACGTAGATTGCAACGTAAGGTATCTCGTAAATACCAAAACAATAAAGAAGGGAGT 63571 | || || || |||||||| || || ||||| ||||| ||| ||||| ||| ||| | Sbjct 37589 CGCTTGCGGAGGTTGCAACGCAAAGTTTCTCGCAAATATGAAATGAATAAGGAA-GGAAT 37647 Query 63572 ACGTTT-GTCAAAACTTGTAATATTATAAAACTTGAAAAACAAATTAAACTCCTACAACG 63630 ||||| || || || ||||| ||| ||||| | ||||| ||| | || || || Sbjct 37648 CCGTTTCGTTAAGACATGTAACATTGTAAAAGTCGAAAATTCCATTCGTTTGCTTCATCG 37707 Query 63631 AAGATTGTCTAATATCCGTAAAAATCATTTACATCAAACAACAACTTCTATCGTGAAAAC 63690 ||| | ||||||| || ||||| | |||||| |||||| | || | |||||| Sbjct 37708 GAGAATAACTAATATTCGCGGCAATCACATCCATCAAGCAACAAACGCGATAGCGAAAAC 37767 Query 63691 CAAACCTAGAAGAATTGTTATAGAAGATTTGAATGTAAGTGGTATGATGAAAAATAGACA 63750 ||| ||||| |||| || ||||| |||||||| | || |||||||| || || | Sbjct 37768 CAAGCCTAGCGCCGTTGTGATGGAAGACTTGAATGTGAAAGGGATGATGAAGAACCGATA 37827 Query 63751 -TTTAGCTAAAGCAATACAAAAACAAGGTTTCTATGAATTTAGAAGACAATTAGAATATA 63809 || ||| |||||||| | ||| | |||| |||| ||||| | |||| | Sbjct 37828 CTTGAGC-AAAGCAATTGCAGGGCAAAAACTGCATGAGTTTACCCGACAAATGAAATACA 37886 Query 63810 AGTGT-AAAAGAAAAGGTATTGAATTAGTTATAGTAAATAGATTCTTTCCTTCTAGTAAA 63868 ||||| | |||| | | | ||| | || | || | || |||| ||| Sbjct 37887 AGTGTGAGAAGATAGGCGCAAGGTTTA-TCCAAGCCGACAGGTGGTTCTCTTCATCGAAA 37945 Query 63869 ACATGTTCTAGTTGTGGAATTATTAATAAAAACTTAAAACTTTCAGATAGAGTATTTAAC 63928 ||||| ||||||| || || ||| |||| ||| | || ||| | || | | Sbjct 37946 TTGTGTTCGTGTTGTGGGCGAATCAAGAAAGACTTGAAATTATCTGATCGTACATATGAA 38005 Query 63929 TGTGAGTGTGGATTTAGTATTGATAGAGACTTTAATGCTAGTGTTAATTTAGCTAATTAT 63988 || || || ||||| | |||||| |||| | || || | |||||| ||| Sbjct 38006 TGCGATTGCGGATTAATTATTGACCGAGATATGAACGCGGCAATCAATTTATCTA----- 38060 Query 63989 AATATTTAGACTATCACTAACAAGATA---CTAAGTATATGTACCATTCGTTGTATGGGA 64045 ||| | || |||| ||| | || ||| ||||||| ||||||||||| || Sbjct 38061 AATTGGCGAATTAACACTTACACGTTATCGCTA---ATATGTAGGATTCGTTGTATCCGA 38117 Query 64046 ATTTAAGCCTTCGGAGTATTATAGCAAACTTGAGTAG 64082 ||||| ||| | ||||| ||||| ||||| ||||| Sbjct 38118 ATTTACGCCCTTGGAGTGTTATATCAAACAAAAGTAG 38154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454546934807680