Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_024384.1 Length=41156 Score E Sequences producing significant alignments: (Bits) Value seq10 80.6 7e-11 >seq10 Length=223028 Score = 80.6 bits (88), Expect = 7e-11 Identities = 181/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 5059 GACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGCGACTTTTACGCTAGCAGTA 5118 |||||||| ||||| || |||||| ||||| || || | ||||| | ||||| Sbjct 111479 GACCCTGAGTTACGCTATACTCCAAACGGAGTTGCCGTAACTCAGTTTACTTTGGCAGTG 111420 Query 5119 AATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTT 5178 || | || |||| || | | ||||||| ||||| ||||| || || | Sbjct 111419 GATAGACCTTTTACAAGTCAAGGGGGAGAACGTGAAGCAGATTTTATCCCGATCGTCACT 111360 Query 5179 TGGCGTAAACCAGCGGAAAACGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCAGGCGTT 5238 |||||| || ||| |||| || |||| ||| ||||| || | |||| || Sbjct 111359 TGGCGTCAATTAGCAGAAACGTGTGCCAATTATTTGCGTAAAGGCCGCTTAGCAGCAGTC 111300 Query 5239 GATGGACGTGTTCAAACTCGTAATTATGAGGACAGCGACGGTAAACGCGTTTTCGTTACT 5298 || || || |||| ||||||||||||| | | ||| || |||||||| | || || Sbjct 111299 GAAGGTCGAATTCAGGTTCGTAATTATGAGAATAACGAGGGAAAACGCGTCTATGTCACA 111240 Query 5299 GAGGTAGTTGCTGAAACAGTTCAATTCTTAGA 5330 || || ||||||| | |||| || ||||| Sbjct 111239 GAAGTTATTGCTGACAATGTTCGTTTTTTAGA 111208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131570487572832