Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq62 93.3 1e-13 >seq62 Length=75506 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || || ||||| |||| ||||| ||| ||| | |||| Sbjct 20296 AAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGACTCCATCGACAAC 20237 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 20236 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTGATCTTC 20177 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 20176 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 20117 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | || || | ||||| Sbjct 20116 ACGCTGCACTTGGTGCTGCGTCTTCG 20091 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || || ||||| |||| ||||| ||| ||| | |||| Sbjct 20524 AAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGACTCCATCGACAAC 20465 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 20464 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTGATCTTC 20405 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 20404 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 20345 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 20344 ACGCTGCAC 20336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181751873256392