Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq295 152 5e-32 seq270 149 6e-31 seq62 149 6e-31 >seq295 Length=50006 Score = 152 bits (168), Expect = 5e-32 Identities = 353/527 (67%), Gaps = 9/527 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| |||| |||||| ||||||| | || || || Sbjct 30134 CAGCAGATGATCATGCGCGTGGCGCTGGGTATTCACAAGCAAGACATCCAGGCGGCACTG 30193 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 | ||||| | | ||||| || ||||||||||| ||||||| | ||| | Sbjct 30194 CACACGTATGAGCTCATGTCACAGATGTTCTTTACGCACGCGACGCCCACGCTCTTTAAC 30253 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| |||| || || |||| |||||||| |||| |||||| || ||| Sbjct 30254 GCCGGCAC-GCCGCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGGCCATGCAGGACGACTC 30312 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||||||| ||||||| | ||||| || ||||| | | ||| || Sbjct 30313 GATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGAGG 30372 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || | | | || || | ||||||| ||| |||| ||| ||||| Sbjct 30373 TATTGGCATCAGTATGCACAACATCCGCGCCACGAACAGCTACATCCGCGGCACGAACGG 30432 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | ||| ||| | |||||| || | || |||||| || ||| || |||| || Sbjct 30433 ATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCTATGTGGA 30492 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| ||| |||||||||||| | |||||||| |||||||||||||||| || Sbjct 30493 CCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGA 30552 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCGC 8037 | | | || | || | ||||| ||| || ||| | ||| |||||| Sbjct 30553 CGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAACGA--GCTGCACCGCGCGCGC 30610 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || || |||| || ||||||| ||||||||||| |||| ||| || Sbjct 30611 GACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGT 30657 >seq270 Length=49446 Score = 149 bits (164), Expect = 6e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 17070 AGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 17129 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| |||||||| || ||||| |||||||| Sbjct 17130 CCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 17189 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || ||| | | ||| |||| |||||||| | || Sbjct 17190 TTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTG 17249 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || || || ||||| || ||||| || ||||| ||| || Sbjct 17250 ATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTGGTT 17294 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 16842 AGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 16901 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| |||||||| || ||||| |||||||| Sbjct 16902 CCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 16961 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || ||| | | ||| |||| |||||||| | || Sbjct 16962 TTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTG 17021 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || || || ||||| Sbjct 17022 ATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 17059 >seq62 Length=75506 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| | ||| ||||| || ||||| || |||||||||||| Sbjct 20082 TTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCG 20141 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| || ||| || ||||| ||||| || || |||| ||||||||| |||||| Sbjct 20142 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGC 20201 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || ||||| ||||| || || || ||| | | ||| || | ||| Sbjct 20202 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCC 20261 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || || || || || ||||| || ||||| Sbjct 20262 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20311 Score = 149 bits (164), Expect = 6e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| ||||| || ||||| || ||||||||||||| | ||| || Sbjct 20322 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 20381 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| ||||||||| |||||||| ||||| || Sbjct 20382 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 20441 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| || || || ||| | | ||| || | |||||||| || || Sbjct 20442 TTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTG 20501 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 ||||| || || || || || || ||||| || ||||| || ||| Sbjct 20502 ATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTTCTTT 20546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505369642831040