Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2952 116 5e-21 seq54 93.3 5e-14 seq78 91.5 2e-13 seq4410 86.0 8e-12 >seq2952 Length=1496 Score = 116 bits (128), Expect = 5e-21 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 1255 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1196 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 1195 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 1138 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 1137 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1078 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 1077 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1018 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 122663 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 1017 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 963 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| | ||||| || ||| || || || || ||||||| ||||| ||||| Sbjct 962 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 903 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 902 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 843 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATT 122842 ||| || ||||| | || || || | | |||| ||| || | ||| |||| | Sbjct 842 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 784 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 783 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 >seq54 Length=68445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 341/528 (65%), Gaps = 12/528 (2%) Strand=Plus/Plus Query 11293 TTCATTGAGAAGGTTTGCCAACTCCGCACCAGAGAATCCAGTTGTTTGCTTGGCAATACT 11352 |||||| || || ||| |||| || ||||| |||||||| || || |||| ||||| | Sbjct 20534 TTCATTCAGGAGATTTTCCAAATCTGCACCGGAGAATCCCGTAGTACGCTTCGCAATGAT 20593 Query 11353 CGCGAGACTGACATCTTCAGATAACTT-CTTGTCTCGGGCATGGACTCCCAAAATCTTCT 11411 | || | ||||||| | ||| | ||||| || | || ||| || || | | Sbjct 20594 GTCCAGCTTCACATCTTTGG-TAAGTGGCTTGTTGCGTGAGTGTACTTTCAGAACCGCTT 20652 Query 11412 TGCGACCTCGCACACTTGGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAA 11471 ||||||| ||| || || |||| || | || |||||||| || || || | Sbjct 20653 CACGACCTCTCACGTCAGGGCGATCCACCGTAATTTGACGGTCAAAACGTCCTGGACGCA 20712 Query 11472 GGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCT 11531 | | ||| || || || || | || || || || |||| | | ||| || | Sbjct 20713 GCAAGGCAGGGTCCAGAATGTCTGCACGGTTCGTAGCTGCAACGATGATAATACCT---T 20769 Query 11532 CATTGTCA---AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCAT 11588 ||||| | || |||||||| || ||| || || || | ||||||||| | || | Sbjct 20770 CATTGGCTCCGAAACCATCCATTTCAACGAGCAACTGGTTGAGTGTTTGTTCACGTTCGT 20829 Query 11589 CATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGA 11648 | | | | |||||||| || || || ||||||||||| ||||| || | Sbjct 20830 CGTGACCACCACCAAGACCAGCACCACGCTGACGTCCTACCGCATCAATTTCATCGATAA 20889 Query 11649 AGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCAC 11708 ||| |||||||| |||| || ||||||| | || || || | |||| Sbjct 20890 AGATGATACATGGGGCGTTTTTCTTCGCATTTTCAAACAAGTCACGTACACGAGATGCAC 20949 Query 11709 CCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATT 11766 | ||||| |||||||| || || |||| | | || | || || |||||| ||| Sbjct 20950 CGACACCGACAAACATTTCAACGAAGTCAGAACCGGA--AATGCTGAAGAATGGTACACC 21007 Query 11767 TGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || |||||| || | || || || || | ||| || || ||||| || Sbjct 21008 TGCTTCACCGGCAACAGCACGAGCAAGCAAGGTTTTACCTGTACCCGG 21055 >seq78 Length=176444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 182660 AAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACC 182719 |||||| ||||| | || || || || ||| | ||| |||||||| || |||||||| Sbjct 72575 AAGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACC 72516 Query 182720 GTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACC 182779 ||| |||||||| ||||| || | ||||| || || || || | || || |||||||| Sbjct 72515 GTACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACC 72456 Query 182780 CTCCGTGACAATGAGAGTACACT 182802 ||| || | ||| || | |||| Sbjct 72455 CTCAGTCAAAATCAGCGAGCACT 72433 >seq4410 Length=1904 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 798 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 857 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 858 CCGGTAGGAGCT 869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627996264979200