Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq295 248 1e-60 seq2952 183 4e-41 seq78 98.7 1e-15 seq54 91.5 2e-13 >seq295 Length=50006 Score = 248 bits (274), Expect = 1e-60 Identities = 1121/1754 (64%), Gaps = 76/1754 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 31846 GTAGTACATACCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 31787 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | || || | ||| | ||||| ||| || ||| || || Sbjct 31786 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 31727 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || ||||||| || || | ||| ||||| |||||| |||||||| ||| |||| Sbjct 31726 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 31667 Query 118022 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGATCCACCCGCCTTGAC 118078 | ||| | | || || || | ||| || || | ||| ||||| | | Sbjct 31666 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 31610 Query 118079 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 || | | || || | ||||| || | || | || |||| || ||| | Sbjct 31609 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 31550 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 118198 ||| || || | |||||||| || || ||| | || || || | |||||| Sbjct 31549 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 31490 Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 118258 ||||| | | |||||||||| ||||| || || || || || || |||||||| || || Sbjct 31489 CGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 31430 Query 118259 CATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC 118318 || ||| || ||| |||| || | | | | | |||||||| || |||| || Sbjct 31429 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 31370 Query 118319 GTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 | | || | || | ||| ||||| || ||||||| |||||| | | Sbjct 31369 CCACAAGCCCGAAGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATACCCTTGCT 31313 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 118432 || |||||||||| || ||||| || |||||| | |||| | || | || | Sbjct 31312 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTC 31262 Query 118433 C-TCGAGGGCT--------GCGTGATACATTGTTTCAAAAATGCGAGCATTCAT--TGCC 118481 | |||||| || |||| || || || || || ||| ||||| || Sbjct 31261 CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAG 31208 Query 118482 TT---GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGA 118535 || || || | || || ||||| ||| || | |||||| ||||||||||| Sbjct 31207 TTCACGGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGA 31150 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 || ||||| || | |||| ||||| || | ||| || ||||| || || ||||||| Sbjct 31149 CCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACG 31090 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || | || || || ||| | || | || ||| || ||||| || | || Sbjct 31089 GGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCG 31030 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 | ||||| | ||| | || | || | || | ||| |||| || ||||| | Sbjct 31029 TACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACA 30976 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 |||||||| || ||||| | |||||| |||||||| ||||| || |||| Sbjct 30975 GACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCAC 30916 Query 118776 AAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 ||||| ||| || ||||| | ||||| || || ||||| ||| ||| Sbjct 30915 AAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 30859 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| | ||| |||||||| | || | | || || || ||| Sbjct 30858 TCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA- 30800 Query 118893 ACATCGGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | || | |||| | | | ||| || |||||||| | ||||||||| ||| Sbjct 30799 -CAGCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTA 30743 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || | || ||||| || ||| | ||| |||| || || |||| || |||||||| Sbjct 30742 CAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAA 30683 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 || ||| | || | | || || ||||||||||| || || |||| ||| || || Sbjct 30682 AAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGC 30623 Query 119069 CGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 ||||||| || || || | || | || | || || || |||| ||||| | Sbjct 30622 GTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGA 30564 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 119184 | || | | || ||||||||||| |||||||| | |||| || || || || | Sbjct 30563 ACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGC 30504 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 || |||||| ||||| | || ||| | || || || | ||||| || ||||| | Sbjct 30503 CTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCC 30444 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 | | |||| || || || || || || || |||| | || | ||| || Sbjct 30443 CGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATAC 30384 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 || |||||||| || |||||||| ||||| |||||||| | |||| || |||| | Sbjct 30383 TGATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAA 30324 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || || |||||||| ||| | || | ||||| || ||||| || || | | Sbjct 30323 TGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCG 30264 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTG 119483 | || || ||||| ||||| || || |||||||| | || | || | || ||||| Sbjct 30263 GCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGC 30205 Query 119484 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543 || || || | || | || | ||||||| | ||||||||| | || || ||||| Sbjct 30204 TCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATG 30145 Query 119544 AACATGTATTGGGG 119557 | ||| | ||||| Sbjct 30144 ATCATCTGCTGGGG 30131 >seq2952 Length=1496 Score = 183 bits (202), Expect = 4e-41 Identities = 363/526 (69%), Gaps = 10/526 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 1255 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1196 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || |||||||| ||| | | ||| |||| ||| | | | || || | Sbjct 1195 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCAC-CCAGTGAG-TACAGCAGGC 1138 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| ||||||| |||| | | |||||||| ||||| || | Sbjct 1137 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1078 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||| ||| | |||| | | |||||| ||||||| || |||||||| |||| Sbjct 1077 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1018 Query 129966 GAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTC 130023 | | | | ||| | ||| | | || ||| || | | | | ||| || || || Sbjct 1017 GCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGGCAC-GCGAAGTC 960 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 | ||| | |||||||| ||| |||||| || |||||||||| |||||| |||||||| Sbjct 959 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 900 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | || || || || |||||||| || |||||||| Sbjct 899 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCAC 840 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCA 130202 |||||||| | |||||||| | |||| || || | ||| ||||||| | Sbjct 839 GGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACTTGA 781 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 780 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 >seq78 Length=176444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 179920 AGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 179979 || |||||||| | ||||| || || || | || || || ||||| ||||||||| Sbjct 72574 AGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 72515 Query 179980 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 180039 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 72514 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 72455 Query 180040 TCCGTCACGATGAGCGTACACT 180061 || |||| || |||| |||| Sbjct 72454 TCAGTCAAAATCAGCGAGCACT 72433 >seq54 Length=68445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 284/440 (65%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 13907 TCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCG 13966 ||||| ||||| || |||| || ||||| ||||| ||||| || |||| || ||| | Sbjct 20535 TCATTCAGGAGATTTTCCAAATCTGCACCGGAGAATCCCGTAGTACGCTTCGCAATGATG 20594 Query 13967 TGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGCGTGGACACCCAAAATCTTCTCG 14026 | ||||||||||| | | | ||||| || | ||| || || || | || Sbjct 20595 TCCAGCTTCACATCTTTGGTAAGTGGCTTGTTGCGTGAGTGTACTTTCAGAACCGCTTCA 20654 Query 14027 CGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGG 14086 ||||| | ||| || | ||| || || | ||| ||||| || ||||| || || Sbjct 20655 CGACCTCTCACGTCAGGGCGATCCACCGTAATTTGACGGTCAAAACGTCCTGGACGCAGC 20714 Query 14087 AGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCG 14146 | ||| ||| || || || |||||||| || || | || | || || | | Sbjct 20715 AAGGCAGGGTCCAGAATGTCTGCACGGTTCGTAGCTGCAACGATGATAATACCTTCATTG 20774 Query 14147 TTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTC 14206 | || |||||||| ||| | | || |||| |||||||| ||||| || | Sbjct 20775 GCTCCGAAACCATCCATTTCAACGAGCAACTGGTTGAGTGTTTGTTCACGTTCGTCGTGA 20834 Query 14207 GCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 || | ||| |||| || || || || || |||||||||||||| || | | Sbjct 20835 CCACCACCAAGACCAGCACCACGCTGACGTCCTACCGCATCAATTTCATCGATAAAGATG 20894 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 |||||||| |||| ||| |||||| | || || || | ||||||||| Sbjct 20895 ATACATGGGGCGTTTTTCTTCGCATTTTCAAACAAGTCACGTACACGAGATGCACCGACA 20954 Query 14327 CCCACAAACATCTCCACAAA 14346 || |||||||| || || || Sbjct 20955 CCGACAAACATTTCAACGAA 20974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618400011037120