Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2952 109 6e-19 seq54 86.0 7e-12 >seq2952 Length=1496 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 840 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 899 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 900 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 >seq54 Length=68445 Score = 86.0 bits (94), Expect = 7e-12 Identities = 241/369 (65%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| ||||| || |||||||| || | || || || || || | || ||||| || Sbjct 20690 ACGGTCAAAACGTCCTGGACGCAGCAAGGCAGGGTCCAGAATGTCTGCACGGTTCGTAGC 20749 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCA---AAACCATCCATCTCTGTCAAAAGTTG 9639 || | || | ||||||| ||||| | ||||||||||| || | | || Sbjct 20750 TGCAACGATGATAATACCT---TCATTGGCTCCGAAACCATCCATTTCAACGAGCAACTG 20806 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCC 9699 ||| | |||||||| ||||| || | | | |||||||| || || ||| Sbjct 20807 GTTGAGTGTTTGTTCACGTTCGTCGTGACCACCACCAAGACCAGCACCACGCTGACGTCC 20866 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 9759 || |||||||| ||||| || |||| ||| ||||| |||| || |||||| Sbjct 20867 TACCGCATCAATTTCATCGATAAAGATGATACATGGGGCGTTTTTCTTCGCATTTTCAAA 20926 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 | || |||||||| || || ||||| |||||||| || || |||| | |||| Sbjct 20927 CAAGTCACGTACACGAGATGCACCGACACCGACAAACATTTCAACGAAGTCAGAACCGGA 20986 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 | || ||| || ||| | |||||| |||| || || || || | || ||||| Sbjct 20987 AATGCTGAAGAATGGTACACCTGCTTCACCGGCAACAGCACGAGCAAGCAAGGTTTTACC 21046 Query 9880 CGTACCTGG 9888 ||||| || Sbjct 21047 TGTACCCGG 21055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583227612460480