Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_028746.1 Length=44249 Score E Sequences producing significant alignments: (Bits) Value seq10 118 3e-22 >seq10 Length=223028 Score = 118 bits (130), Expect = 3e-22 Identities = 218/318 (69%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 35860 ATGCTGAATAGGGTTGTTTTAATCGGCAGACTGACGAGAGATCCGGAATTAAGATATACT 35919 ||| |||| || || |||| || || | | || | || || || ||| | |||||| Sbjct 111518 ATGTTGAACAGAGTGATTTTGATTGGTCGGTTAACTCGTGACCCTGAGTTACGCTATACT 111459 Query 35920 CCATCCGGTGTAGCTGTCACCAAGTTTACCCTGGCGGTAGACCGTCCGTATATGAACCAG 35979 ||| ||| || || || || ||||||| |||| || || | || | || | || Sbjct 111458 CCAAACGGAGTTGCCGTAACTCAGTTTACTTTGGCAGTGGATAGACCTTTTA----CAAG 111403 Query 35980 -CAAACGCGTGAGCGAGAGACGGATTTCATTAATATCGTGACGTGGAGACAAACCGCGGA 36038 ||| | | || || || | ||||| || ||||| || ||| | ||| || || Sbjct 111402 TCAAGGGGGAGAACGTGAAGCAGATTTTATCCCGATCGTCACTTGGCGTCAATTAGCAGA 111343 Query 36039 AGCCTGTGCCAATCACCTTCGCAAAGGCCGTTTGACGGCAGTAGAAGGAAGAATCCAGGT 36098 | | ||||||||| | | || |||||||| || | ||||| ||||| |||| ||||| Sbjct 111342 AACGTGTGCCAATTATTTGCGTAAAGGCCGCTTAGCAGCAGTCGAAGGTCGAATTCAGGT 111283 Query 36099 GCGTAATTATGAGAACAATGAGGGCCGCAGAATCTATGTAACCGAGGTTGTGGCTGATAA 36158 |||||||||||||| || ||||| | ||||||| || || ||| | ||||| || Sbjct 111282 TCGTAATTATGAGAATAACGAGGGAAAACGCGTCTATGTCACAGAAGTTATTGCTGACAA 111223 Query 36159 TGTGCGCTTTCTTGAATC 36176 ||| || ||| | ||||| Sbjct 111222 TGTTCGTTTTTTAGAATC 111205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141467552558064