Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_028749.1 Length=134270 Score E Sequences producing significant alignments: (Bits) Value seq2 145 7e-30 >seq2 Length=712559 Score = 145 bits (160), Expect = 7e-30 Identities = 334/496 (67%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 96678 TAAATTTCTTGTCCAAGCAAACCACCAAATAGTCCATGCACACTTTCATCACGAATGATT 96737 || ||||| || | | || ||| || ||| ||||| | ||||||||| || | || Sbjct 470354 TATATTTCCTGGGCCAACACACCTACATATACACCATGAATACTTTCATCCCGCAGAATC 470295 Query 96738 AAGTTAATAATTTCACCACTTGCAACC-ATCTTCCCTTGACCAGCCAAATACAGAGGGTA 96796 | | ||| || |||||||| ||| | || ||||| ||||| ||||| || || || Sbjct 470294 AGATCAATGATCTCACCACT-GCAGGTGAGTTTGCCTTGTCCAGCTAAATAGAGTGGATA 470236 Query 96797 AAAGAAACCACTATAAAATAGGAACGACTCT--AAGAACACAGAGGCTACAATTGCCATA 96854 ||||| || || ||||| | || ||| | || | || || || | || |||||| Sbjct 470235 GAAGAATCCGCTGTAAAACA--AATAACTTTCCAAAAGTACGGAAGCGGCCATCGCCATA 470178 Query 96855 TATAAGTCTTTCTTTGTTTCAATGTTGCGGTAATATTTGTCAATGATAGACACTTTCTTT 96914 ||||| ||||| ||||||||||| ||||| | || | | | |||| || Sbjct 470177 TATAAATCTTTTGAAGTTTCAATGTTCATATAATACTGACGTATAACCGTCGCTTTGGTT 470118 Query 96915 TGTAGATATTTATTCTCAGCGACCCAATCAAATACATCGTCGATTTCTTCCTTTGTGGCT 96974 || |||||| ||| || | ||||| | ||||||| ||| |||||||| ||| ||| Sbjct 470117 TGCAGATATGGATTTTCTTCCACCCATTTAAATACACTGTCAATTTCTTCGGTTGAGGCC 470058 Query 96975 AATGTTGTAAAAATTGTACTATAAGATTTTGCATGGATGCCTTCCATCATTCCCATAAAA 97034 ||||| |||||||| | || || ||||| ||||| || ||||||||| ||||||| Sbjct 470057 AATGTGGTAAAAATACTGCTGTAGGATTTCGCATGAATTTGTTCCATCATCGCCATAAAG 469998 Query 97035 GACAAGACAG-ATTTCTTAGCAAGGTCATTTATATGGTCTAAGATTTTTGGCATACCAAC 97093 | |||| || | | || || ||| | ||| || | || | |||||||| || Sbjct 469997 CTTAGTACAGCCTTGCGTTGC-AGTCCATCCACATGCTCCATAATCTGCGGCATACCTAC 469939 Query 97094 AGTATTTTGCTCTGTATCAAGCAATGTTAACCCACCTAATACTTTCATGTAAGTGTCTCG 97153 | || ||||| || | |||| || || || |||||||| |||| |||| Sbjct 469938 ACCGCCCTGAATGGTATCCAGAAGGGTTAGGCCTCCCAAAACTTTCATATAAGCGTCTTT 469879 Query 97154 CTCTATTTGACTTAGC 97169 ||| | | ||| ||| Sbjct 469878 TTCTGTATCACTGAGC 469863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429515370239032