Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_028764.1 Length=49316 Score E Sequences producing significant alignments: (Bits) Value seq44 145 2e-30 >seq44 Length=71862 Score = 145 bits (160), Expect = 2e-30 Identities = 337/506 (67%), Gaps = 9/506 (2%) Strand=Plus/Plus Query 967 CCTTTTCCGAAAGTAGTTGCTACAGCTCCAACACGACAACAATTATATGACGTACTATGG 1026 || |||||||| || | |||||| || || || ||||| || | || || | ||| Sbjct 43672 CCGTTTCCGAAGGTTATCTGTACAGCACCGACTCGTCAACAGTTGCACGATGTCTTGTGG 43731 Query 1027 GCTGAAATAGCTAAATGGCTAAGTAATAG---CAAGGTTGAGAAGCTACTTGAGTGGACT 1083 ||||| || |||||||| | || || | | | | | | |||| ||||||| Sbjct 43732 GCTGAGATTAGTAAATGGCAAGAGAAAAGTCCCTTGCTCAAAAGGATACTCAAGTGGACG 43791 Query 1084 AAAACAAAAGTGTATATGAAAGGCTTTGAAGAAAGATGGTGGGCTACAGCTAGAACAGCA 1143 ||||| || | |||||| | | || ||| |||||| ||||||||| | ||||| Sbjct 43792 AAAACTAAGATTTATATGCGAAATTACGAGGAACGATGGTTTGCTACAGCTCGGACAGCC 43851 Query 1144 GTAAAGCCCGAGAATATGCAAGGTTTTCATGAAGATTATATGTTATTTGTTGTTGATGAA 1203 ||||||||||| ||||| ||||| |||||||| || ||| | || |||| ||||| Sbjct 43852 ACCAAGCCCGAGAACATGCAGGGTTTCCATGAAGAGTACATGCTTTTCATTGTGGATGAG 43911 Query 1204 GCTTCGGGAGTTGCTGACCCCATTATGGAAGCTATATTGGGAACATTATCAGGTGCAGAA 1263 ||||| || || | || | |||||||| || || ||||| ||| | || || | Sbjct 43912 GCTTCAGGGGTAGAGGATCGGATTATGGAGGCCATCTTGGGTACACTCTCCGGGGAGTTC 43971 Query 1264 AATAAGCTTCTTTTATGCGGAAACCCAACTAGAACGAGTGGAACGTTTTACGATAGCCAT 1323 |||||||| || | || || ||||| ||| | || || || |||||| ||| || Sbjct 43972 AATAAGCTGCTCATGTGTGGTAACCCGACTCGTACCAGCGGTGTGTTTTATGATTCACAC 44031 Query 1324 AATAGAGACAG---AGATTTATATAAAACATTTAAAGTATCTTCTTTAGATAGCCCTAGA 1380 || || ||| | |||| || || || ||||| || | | || | || ||| | Sbjct 44032 AACAGGGACCGGGCAGAT---TACAACACGCACAAAGTTTCCTGTCTAAACAGTCCTCGG 44088 Query 1381 ACATCAAAAGATAATATTGAAATGCTAAAAAGAAAGTACCATGAAGGTTCTGACCCTTGG 1440 ||| ||||| || || | ||||| || | || || | || ||||| ||| Sbjct 44089 ACAAGTAAAGAGAACATAGCTATGCTTGAACGTAAATATGGCAAGGGATCTGATGTATGG 44148 Query 1441 CGTGTTAGAGTTCTTGGAGAATTTCC 1466 ||||| || ||| || ||||| || Sbjct 44149 CGTGTCAGGGTTGAAGGGGAATTCCC 44174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157681076088672