Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_028767.1 Length=45653 Score E Sequences producing significant alignments: (Bits) Value seq54 111 5e-20 seq44 111 5e-20 >seq54 Length=68445 Score = 111 bits (122), Expect = 5e-20 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 31908 ATGAAAGCAACCGGAATTGTAAAGAAACTTGACCATTTAGGACGGGTAGTTATCCCGAAA 31967 |||||| |||| || ||||||| ||| | || | | |||||||||||||| || | Sbjct 55782 ATGAAATCAACAGGTATTGTAAGAAAAGTGGATGAACTGGGACGGGTAGTTATTCCAATC 55841 Query 31968 GAACTTCGCGGCACTTTAGGCATTGGTGAAAAAGACGCTCTGGAAATCTATGTAGACGGT 32027 ||| | ||| | || | || |||||||||||||| ||||| || |||||||| ||||| Sbjct 55842 GAATTGCGCCGTACGCTCGGTATTGGTGAAAAAGATGCTCTTGAGATCTATGTTGACGGC 55901 Query 32028 GAGCGCATTATGCTGAAGAAATATAACCCGGGCTGCTATC-TCTGTGG 32074 ||||| || ||| |||| ||||| | || ||| |||| ||||||| Sbjct 55902 GAGCGTATCATGTTGAAAAAATACGAGCC-AGCTTGTATCTTCTGTGG 55948 >seq44 Length=71862 Score = 111 bits (122), Expect = 5e-20 Identities = 221/321 (69%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 22586 CATT-TTCAATGAATTGTCTTAAGGTCATTTTTTGTGGGGCAATATATTCCCCTGCCTCA 22644 |||| ||||||||| | | || | |||||| ||| || |||||||| ||||| || Sbjct 26131 CATTCTTCAATGAAGTCAATGAATATTGTTTTTTCTGGTGCGATATATTCTCCTGCTTCT 26190 Query 22645 ACCTCGATTTTAAATTTGTGTAGCTCATCCTCTAAATATTCTCGCAGCTTCTTTTTGGTT 22704 || || ||||||||||| ||||| | | | | || || | || || ||| Sbjct 26191 ACTTCAATTTTAAATTTAGCCAGCTCGTTGTTAAGGTGATCATTCAACCGTTTCTTTGTT 26250 Query 22705 TTCAGTAGCGCTTTGTCCTCAACAACAACTTTCCTT-CTTAACCGATTACGGCTACCATC 22763 | | | ||| ||||||| | || || | || | ||||| || || || || Sbjct 26251 CTTAACAAGACTTCATCCTCAATCATAA-TTGCTTTACGGGGACGATTGCGACTGCCGTC 26309 Query 22764 TTGGTTATATCCAAGATCAATTGTCAGCCGCCAAGTATTCTCTCCTCGTTTTTCAATGCT 22823 ||| | || | |||| || |||||||| || || | ||||| |||||| ||||| Sbjct 26310 CCCGTTTAAACCTAAGTCAACCGTAAGCCGCCATGTGTTTTTTCCTCTTTTTTCTATGCT 26369 Query 22824 ACCTTTTGCCATTTTAATTCCCTCCTAATGGAACATATGTTCTATTTTTATGTATAGTAA 22883 |||||||||| | |||||| |||| | | |||| ||||| ||||| ||||| |||| Sbjct 26370 TCCTTTTGCCACATAAATTCC-TCCTGAAG-AACACTTGTTCCGTTTTTGTGTATGGTAA 26427 Query 22884 ACAGCCTTACAACTGGAAAGC 22904 |||||||| | ||||||||| Sbjct 26428 ACAGCCTTGCGGCTGGAAAGC 26448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145960109699760