Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_028969.1 Length=52955 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 2e-12 >seq11 Length=216871 Score = 86.0 bits (94), Expect = 2e-12 Identities = 315/492 (64%), Gaps = 1/492 (0%) Strand=Plus/Minus Query 10463 ATGGGAGCTATTCAGAACTTTGATGCTCAAAAGGACATTATTGTTTCTCCAGGTAATGAT 10522 || ||||| ||||| || || ||| | ||| ||| |||| || ||| || ||||| Sbjct 11236 ATTGGAGCGATTCAAAATTTCGATTCCAAAACGGATATTACCGTGCTTCCGGGGAATGAA 11177 Query 10523 AGTGATTCATTGCTAACTGAGGGGTATATCCAACCTGTCGATGCCATGGAGAAAAACTAC 10582 | || | | | ||| | | | | || ||||| ||| | | || ||| ||| Sbjct 11176 ACCGACAGTATTTTGATTGAAGTGCAGGTGCAGCCTGTGGATTCTGTTGAAAAAGTATAC 11117 Query 10583 TTAAAGGCGGTGGTGCGATAA-ATGGCTTTTTTAAAATATGAAGACACGATAAATGGTCA 10641 | || | | |||| ||| ||||| ||||| ||| |||||||| || || Sbjct 11116 ATGAAAGTGAAGGTGGTTTAAGATGGCATTTTTGAAAGCAAGCGACACGATCTCCGGCCA 11057 Query 10642 GGAAGGACGTGCCTACGCCACGATTAACGGTCGTGTAGAGGAAATGTTTTGGCTTaaaaa 10701 |||||| || || ||||| ||||||||||| | || |||||||| | | || | Sbjct 11056 GGAAGGCCGCGCATACGCAACGATTAACGGACAGACGGAAGAAATGTTCTATGTGAAGAC 10997 Query 10702 gttcgaagcaaaggtagaaaagaacaaaaaagaaggaaagaCACTAAACAGACGTGGTAC 10761 | ||||||| ||||| ||| | ||| ||| | || || || | || ||| Sbjct 10996 ACTTGAAGCAACTGTAGAGAAGCAAAAAGCAGAGGTTAAAACCCTCGGTCGTCGAGGTGT 10937 Query 10762 ACAGCATAAGGCAATGGGATGGAAAGGTACGGGTAGCATGACTATTTACTATGTGACCAC 10821 |||||| || |||| || ||| || ||||| |||||| || | ||| || | Sbjct 10936 ACAGCACAAAGCAACAGGTTGGTCTGGCTCGGGTTCCATGACAATCTTTTATACCACATC 10877 Query 10822 CCTTTTCCGCCAACTTATGCTCGATTACATGAAGACAGGTAAAGACATTTACTTTGATGT 10881 || |||||| | | ||||| | |||||| ||| || || | |||||| || | Sbjct 10876 CCGTTTCCGTGAGTTGATGCTTCAATACATGCAGAATGGCGTCGATACTTACTTCGACAT 10817 Query 10882 TCAGATCACGAATGAAGACCCGACATCTAGTGTTGGAAAGCAAACTGTTGTCATCAAAGG 10941 | | | || || ||||| || | |||| |||| || || ||||| ||||||| Sbjct 10816 TGAAGTGACCAACGAAGATCCTTCGTCTACCATTGGCAAACAGACTGTGACTCTCAAAGG 10757 Query 10942 AATTAACCTTGA 10953 | ||||| || Sbjct 10756 CGTAAACCTCGA 10745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169325246629008