Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_029022.1 Length=46895 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 2e-13 >seq5 Length=386383 Score = 89.7 bits (98), Expect = 2e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 11256 CCAGTAGCTTCTTTTATAGATGAAATTTCTAAGCATTCTTTCATAGTTGCCACTGGATTA 11315 |||| ||| |||| ||||| |||| || || |||||||||| || ||| | || | Sbjct 95065 CCAGCAGCCTCTTGAATAGAGGAAAGCTCCAAATATTCTTTCATTGTAGCCGCAGGGCTG 95006 Query 11316 CCTCCAATTGAAAGCTGTCTTTCAGCCAGTTCATCAATATGAAGTGCAGCTTCGTTATAA 11375 || | | ||| | |||||| | |||||| || || | | ||||||| || Sbjct 95005 CCCTTGAGGGTAAGAATACGTTCAGCGATTTCATCCATTTGTACAGTCACTTCGTTGTAG 94946 Query 11376 AGTTCTTCAAATTTTAGATGTAAAGTGAAAAATTGTTGACCTTTAACGAACCAGTGGAAG 11435 | |||||||||||||| ||| | |||||||| | | ||||| || ||||||| || Sbjct 94945 AATTCTTCAAATTTTACATGCAGTGTGAAAAAGTTAGGTCCTTTTACATACCAGTGATAG 94886 Query 11436 TTATGAAGTTTAATGTACA 11454 ||||||| ||| | |||| Sbjct 94885 TTATGAATTTTGACATACA 94867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149934294863568