Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_029024.1 Length=56505 Score E Sequences producing significant alignments: (Bits) Value seq44 468 2e-127 >seq44 Length=71862 Score = 468 bits (518), Expect = 2e-127 Identities = 899/1314 (68%), Gaps = 32/1314 (2%) Strand=Plus/Minus Query 29192 CCGTTGCCAAAACCTTATAAAAATCTAAAAAGT--TTGTTTATTTCCCTGTTCTACGTGT 29249 |||||||||| | || || ||||||| | | | |||||| |||||| ||| |||| Sbjct 38230 CCGTTGCCAAGAG-TTGTATAAATCTACACAATCCTTGTTTGCTTCCCTTTTCCTCGTGC 38172 Query 29250 CCGATTTGG-CCAAAG-CTACTTTCGTTTGATATAACACTCCGAGGGCGTAAATTCGGAT 29307 || |||| | || || ||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 38171 CCAATTTTGTCCTGAGACTACTTTTGTTTGATATAACACTCCAAGGGCGTAAATTCGGAT 38112 Query 29308 ACAACGAATCCTACATATTAGCAATAACGTTTAGGTGTTAATTTGCTAATTGATAATATG 29367 |||||||||||||||||||||| ||||||| || ||||||||| || |||| | | Sbjct 38111 ACAACGAATCCTACATATTAGCGATAACGTGTAAGTGTTAATTCGCCAATTTA------G 38058 Query 29368 ATAAGTTGATAGATGCATTTAAATCCCTATCCATTACAAGACCGCAATCACAGCGATATA 29427 |||| ||||| | || || | ||| | || || | | |||||||| || |||| Sbjct 38057 ATAAATTGATTGCCGCGTTCATATCTCGGTCAATAATTAATCCGCAATCGCATTCATATG 37998 Query 29428 CTCGGTCAGATAACTTTAGGTCTTTCTTAACGCTTCCACAACATGAACACATTTTAGAAG 29487 || |||||||| || | ||||||||| | | |||||||| ||||||| ||| || | Sbjct 37997 TACGATCAGATAATTTCAAGTCTTTCTTGATTCGCCCACAACACGAACACAATTTCGATG 37938 Query 29488 ATGGATACCATCTATCAGCTTCAATGAACTCAATACCATAT-TTTTCACACTTATATTTC 29546 | | |||| || || |||| || ||| | | ||| || |||||||| |||||| Sbjct 37937 AAGAGAACCACCTGTCGGCTTGGATAAAC-CTTGCGCCTATCTTCTCACACTTGTATTTC 37879 Query 29547 ATTTGTCGTTTAAACTCATGAAGTTTTTGATTAGCAAACGCTTTAGATAAGTGTTTATTC 29606 |||||||| |||||||||| |||||||| |||| ||||| |||| | ||| Sbjct 37878 ATTTGTCGGGTAAACTCATGCAGTTTTTGCCCTGCAATTGCTTTGCTCAAGTATCGGTTC 37819 Query 29607 TTCATCATCCCTTTAATATTTAAAGTTTCCATTACAA-TTCGATATGGTTTGGTTTTCAC 29665 |||||||||||||| | ||| || |||||| |||| || || || ||||||||| | Sbjct 37818 TTCATCATCCCTTTCACATTCAAGTCTTCCATCACAACGGCGCTA-GGCTTGGTTTTCGC 37760 Query 29666 GATATCGTTTGTCGTTTGATGAAGATGGTTGGTTCTGATATTTGATAATCTTCTATGCAA 29725 || ||||||| | |||||| | || ||| | ||||| | || ||| | ||| | Sbjct 37759 TATCGCGTTTGTTGCTTGATGGATGTGATTGCCGCGAATATTAGTTATTCTCCGATGAAG 37700 Query 29726 GTGTTGTATCTCATTTTCGATTTTTATAATGTTGCTCGTTTTGACGAAACGGTTCCCCTC 29785 | || |||||||| ||||| |||||| | || || ||||||||| | || || Sbjct 37699 CAAACGAATGGAATTTTCGACTTTTACAATGTTACATGTCTTAACGAAACGGATTCCTTC 37640 Query 29786 CTTATTCATTTTGTATTTACGAGAAACTTGACGTTGCAACCGACGAAGACGTTTCTCTAC 29845 ||||||||||| ||||| |||||||||| |||||||||| || | |||||||| Sbjct 37639 CTTATTCATTTCATATTTGCGAGAAACTTTGCGTTGCAACCTCCGCAAGCGTTTCTCAGT 37580 Query 29846 TTCTCTTACTTCATTTGTTTTGTTGATGTTTTCAAACACTTGACCACCTGAACATACTGC 29905 | |||||| | ||| ||||||||||| | ||| || || ||| || || Sbjct 37579 CTTTCTTACGGCGGCTGTCTTGTTGATGTTCTTAAAGACCATTCCGTTACTACAGACCGC 37520 Query 29906 TAGCTCTTTTACGCCGACATCAATCCCTAGCGAAACATCTGTTAATTCCGTTGTTT-GTG 29964 || ||||| | || |||||||| || | || | || | | ||| | ||| || Sbjct 37519 CAGTTCTTTAATACCTACATCAATACCAATCGCCTCGTCCGACAGTTCAGGGCTTTCTTG 37460 Query 29965 GTTCTTCTTCAATTCCTACAGACAGATACCAGTACTTACCATCAAAACTGAT--TCTTGG 30022 |||| | ||||| ||||| || | |||||| |||||||| ||||| |||| || || Sbjct 37459 CTTCTGC-TCAATACCTACGGATACATACCAATACTTACCGTCAAA--TGATACTCGCGG 37403 Query 30023 ATTGTAGTACTTTACGTCC-AT--TGGTATTCGTTCAGATATTTTCATCCAACCAACTTT 30079 |||| |||||| |||| || ||| | | ||||||| || || ||| || | ||| Sbjct 37402 ATTGCTGTACTT---GTCCGATTCTGGAAGTTGTTCAGAAGTTGCCACCCAGCCTATTTT 37346 Query 30080 TTCAATCAAGGCTTTATTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAGACGG 30139 ||| | ||| | ||| | | || || | || Sbjct 37345 TTCGAGTAAGACCTTACTGTCTTTGACCTTGAACTTGACTGTATCGTTGTAGAACGCTGG 37286 Query 30140 TTTTGACTTCTTTCTGTTTTTAAACTTCGGTCTCTTTGCTTGT--TTCGCAAAGAATTTT 30197 ||| || ||| || | || ||||||||| |||| | |||| || | || | || Sbjct 37285 TTTGGAGCGCTTCTTGATCTTGAACTTCGGTTTCTTGGATTGTCCTTTG--AACATCTTC 37228 Query 30198 TTATACGCATCACAAGCATCTTTAATTGCTTGTTTTGTGATATTATTGGACACCTCATAC 30257 || || ||||| ||||||||||| | |||||||||| | ||| ||||| || || ||| Sbjct 37227 TTGTAGGCATCGCAAGCATCTTTTACGGCTTGTTTTGCTACATTGTTGGAAACATCGTAC 37168 Query 30258 AACCAAACATATTCTTCAGTTTGTTTTAAAACGGTCAATTCTTTACGAAGAATGCCATCA 30317 | |||| |||||||||| || || | ||||| ||||| | || | |||||| Sbjct 37167 AGCCAAGCATATTCTTCTCGCTGCTTGAGTTGCGTCAACTCTTTTCTCAGTACGCCATCG 37108 Query 30318 GATATGAATTTATTTCCGTTCTTGTGGTTTTCTTCTTGCTTTCCCAATGTCCAGTTATAT 30377 | ||| || || |||| || || ||| |||| | | ||| |||| || Sbjct 37107 TGCAAGAACTTCCCGCCATTCTGGTAATTCTCTATTTGCCGGGCAAGCGTCAAGTTGTAG 37048 Query 30378 GCCCATCTCGCTGTTCCTGCTGATTTCCAAAGTTGTCGTTCCTGTTCTTTAGTTGGTTTT 30437 |||| | || || ||||| || ||| | || | ||||| || ||||||| Sbjct 37047 ACCCAGCGAGCCGTCCCTGCCGAACGCCACAACTGCTGCTCCTGCTCAGGAGTTGGTCGA 36988 Query 30438 AACCGAACtttttttGCTAGTATCATAATTTCACCTCC-GTAGCTAAATTATAC 30490 | | ||| ||||| ||||| ||||| ||||| || ||| |||| | ||| Sbjct 36987 ATTCTAACCTTTTTAGCTAGAATCATTTAATCACCACCTTTAGTTAAAGTGTAC 36934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180684632564208