Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq366 102 7e-17 >seq366 Length=43169 Score = 102 bits (112), Expect = 7e-17 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 118468 AGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCA 118527 || ||||||| ||| |||| ||| ||||| || || || || || || ||||||||| Sbjct 17062 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17003 Query 118528 GGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTA 118587 ||| | | ||||| || || || | | || | || |||||| || | ||| Sbjct 17002 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 16943 Query 118588 AAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCG 118647 || || ||||| ||||||||||| || || | |||||||| || || || | ||||||| Sbjct 16942 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 16883 Query 118648 TTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGG 118707 | || || || || || | | ||||| || || ||||| |||| |||| | Sbjct 16882 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 16823 Query 118708 GCAGGATTCCAGGC 118721 ||||| ||||| || Sbjct 16822 GCAGGGTTCCACGC 16809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414453805863328