Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_030920.1 Length=165868 Score E Sequences producing significant alignments: (Bits) Value seq13 141 1e-28 seq8 111 2e-19 >seq13 Length=206566 Score = 141 bits (156), Expect = 1e-28 Identities = 539/833 (65%), Gaps = 31/833 (4%) Strand=Plus/Plus Query 97777 ACAGTACCGGCTATCGAAATCTTTAAACGTATCATGATCTCTCAACTAGAGACAGGCACA 97836 ||||| | ||| || || || | ||||| |||||| || || || || || || || Sbjct 5030 ACAGTTCAGGCGATTGACATTATGAAACGCGTCATGAAATCCCAGCTGGAAACGGGTACG 5089 Query 97837 CCTTACATGTTCTACCGTGATACAGTAAACCGTGCTAACCAAAACA-AGCACGCGGGTAT 97895 ||||||||||| ||||| ||||| || |||||| | |||| |||| |||| | || || Sbjct 5090 CCTTACATGTTTTACCGGGATACCGTCAACCGTTCGAACCCGAACAGTGCACAC-GGCAT 5148 Query 97896 GATCTACTGTTCAAACCTTTGTGTAGAAATCACACAAAACCAA---GGAACAACAGTCGT 97952 | | |||| ||| ||||||||| ||||||| || |||||| | ||| ||| | Sbjct 5149 GGTATACTCTTCCAACCTTTGTACCGAAATCATGCAGAACCAATCTGCAACTGTAGTTGA 5208 Query 97953 AACAGAGGA---AATAACAGAAGACGGTAA------GATCGTTATTACAAAAAGCCCTGG 98003 || ||| || |||| |||| || | ||||| ||| | ||| || || Sbjct 5209 AAAAGAAGAGCTCGTAACCAAAGATGGACAAACCCGCATCGTGATTTCCAAAGTGCCGGG 5268 Query 98004 TGACTTTGTAGTATGTAACTTATCTTCTATTAACTTAGCTCGCGCTGTAACAGACGAAGT 98063 || || ||||| || ||| | || ||| |||| || || || || | | || || Sbjct 5269 CGATTTCGTAGTCTGCAACCTGAACTCCATTCACTTGGCACGTGCCGTGCCTCATGATGT 5328 Query 98064 ACTAGAGCGACTAATCCCAATTCAAATTCGTATGTTAGACAACGTAATTGAGCTGAATGA 98123 | | ||||| | | || ||||| |||||||| | ||||||||||| || | || | Sbjct 5329 ATTGGAGCGTTTGGTACCGATTCAGGTTCGTATGCTGGACAACGTAATCGACATCAACAA 5388 Query 98124 TATCCCTGTACTACAAGCTAAGTTATCTAACCAGAAATATCGTGCAGTCGGCTTAGGTAC 98183 || || || ||||| | | | ||| |||| ||||| || || | || || Sbjct 5389 CATTGAAGTGCTGCAAGCCCAATACACCAACAGCCAATACCGTGCGGTTGGTCTGGGAAC 5448 Query 98184 ATTCGGATGGAACCACTTACTAGCTCTTAAAAAGATTGCATGGGAAACAGACGAAGCAGT 98243 ||||||| | ||| | || ||||| || ||| |||||| | || |||||||| Sbjct 5449 ATTCGGACTCCATCACCTGCTTGCTCTCGAAGGCATTCGTTGGGAATCGGAAGAAGCAGT 5508 Query 98244 AGAGTATTGTGATAGCCTTTACGAAGATATTGCTTACTTAACAGTTCAAGCTTCTATGGA 98303 ||| |||| || || ||| | ||| || | || |||| ||||| Sbjct 5509 CACATATAACGATAATCTGTATGAAAAAATTAACTATCTGCTCGTGAAAGCCAGCATGGA 5568 Query 98304 GCTTTCAAAAGAGAAAGGTGCTTATCCTGCATTCCCTGGGTCAGAATTCGATACAGGCGA 98363 ||| || || || ||||| |||||| ||||| || || || | | |||||| | Sbjct 5569 GCTGTCCAAGGAAAAAGGACATTATCCGAAATTCCAAGGTTCCGATTGGCAAACAGGCAA 5628 Query 98364 GTACTTCTTCAAGCGAGGATATA--TC----GAACGTGGAG--GAAGTAACGTAAAAGAA 98415 |||||| | | || | || | || || || | || ||| | ||| | | Sbjct 5629 ATACTTCGACCAACGGGATTACACGTCAGGTGAGCGCGTAGGCGAATT--CGTTACAACT 5686 Query 98416 GGACGTGACTGGAACCAATTAGCTA-TCGACGTTCATGACAATGGTGTACGTAACGGTTA 98474 | || | ||||| || | || | | | || || | || ||||||||||||| | Sbjct 5687 GAAC---AATGGAAAGAACT-GCAAGCCCAAGTACAGCAAAACGGTGTACGTAACGCCTG 5742 Query 98475 CTTAATGGCTGTAGCACCTAACGGAACTACATCTATCATTGCAGGATCAACAGCAAGTAT 98534 || | || | ||||| || || | || || |||||||| || |||||||| || || Sbjct 5743 GTTGTTCGCCATTGCACCAAATGGCTCAACGTCCATCATTGCCGGTTCAACAGCCAGCAT 5802 Query 98535 CGACCCTATCTTCCGTA-AGTTCTATTCAGAAGAGAAAAAGAACTACAAGATT 98586 || || | || || | ||| | | |||||||||| || ||||||||| Sbjct 5803 TGATCCGCT-TTACGAACTGTTGTCCTATGAAGAGAAAACGACATACAAGATT 5854 >seq8 Length=267700 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 132752 AATATGAGATTAGTGTGGAACGTAGTACATCGGTTTATCAATAGGGGTTATCTTCCCGAA 132811 || || ||| | || ||| ||| ||||| || ||||| || ||||| ||| || ||| Sbjct 36671 AACATCAGACTCGTCTGGTCCGTCGTACAACGTTTTATGAACAGGGGATATGAGCCGGAA 36612 Query 132812 GACCTATTCCAAATTGGTTGTATAGGTTTGCTGAAGAGTATTGATAAATTCGACCTTGAC 132871 || || || || ||||||||||| || |||| || | ||||||||||| || Sbjct 36611 GATCTGTTTCAGATTGGTTGTATCGGGCTGCTCAAATCGGTGGATAAATTCGATCTCAGT 36552 Query 132872 TACGATGTTGCTTTTTCTACCTACGCTGTTCCTATGATTATTGGAGAGATTCAAAGGTTT 132931 || ||||| || || ||||| ||||| || |||||||| ||||| ||||| | || Sbjct 36551 TATGATGTGAAATTCTCCACCTATGCTGTCCCGATGATTATCGGAGAAATTCAGCGTTTC 36492 Query 132932 ATTAGGGATGATGGAACCGTAAAGGTACCTCGAACAATTAAGGAGTTAGCAAATAA 132987 | |||||||||| || | ||||| ||| || | ||||| | || ||||| Sbjct 36491 CTGCGGGATGATGGTACACTCAAGGTCAGTCGTTCACTCAAGGAAATGGCGAATAA 36436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530619406037760