Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq8 223 6e-53 seq2 183 5e-41 >seq8 Length=267700 Score = 223 bits (246), Expect = 6e-53 Identities = 407/589 (69%), Gaps = 8/589 (1%) Strand=Plus/Minus Query 144723 AATTCCAAATGGATATGTTGGTGTAGTTTATTCCCCTAATGGTGGAGTAAAAGAGACTAC 144782 |||||| |||||||||||||| || |||||||| || ||||| || |||||||| | ||| Sbjct 173225 AATTCCTAATGGATATGTTGGAGTCGTTTATTCACCAAATGGAGGCGTAAAAGATAGTAC 173166 Query 144783 ACTTGATCAAGGTTGGCAT-TGGATCAAGCCTTTTGATAAAGTTACAGAATATCCAGTTC 144841 ||| |||||| ||| | | | | ||| ||| |||||||| || ||||||| ||| Sbjct 173165 ACTGAGTCAAGGGTGGAAACTAGTTGGAGCGTTT-GATAAAGTAACGAAATATCCGATTC 173107 Query 144842 GCATGCAAACAGTAAATAATAAAGACATCAAAGTAGCAACATCTGATGGTAAAAACATTG 144901 | || ||||| || | | | ||| || | | || || ||||| || |||||||| Sbjct 173106 GAATTCAAACGGTTGAATACAGAGATATTCAGATTGCTACTTCTGACGGGAAAAACATCA 173047 Query 144902 AAATGGATATTGCTTATAACTATGTTGTACAACCAGATAAAGTAGTAGATGTATTTAATA 144961 ||| ||| ||||||| ||||| ||| ||||| ||||||| | | ||||||| Sbjct 173046 CAATTGATTTTGCTTACAACTACCAAGTAGAACCAAGTAAAGTATCTTCTATCTTTAATA 172987 Query 144962 AGTTTGGTTCAGTTAAAGTTGAACAAATTGAGAATTCATATCTTAAATCACGTTTATGGG 145021 ||||| || ||| || || |||||||| || ||||||| ||| ||||||| | | Sbjct 172986 CATTTGGGCCAATTAGCATTCAAGAAATTGAGGATACATATCTCAAAACACGTTTCCGTG 172927 Query 145022 ATGCCTCTCGTAAAGTGATCTCTAAATATTCAGTAATTGATACTTATGGTCAAAAATCTT 145081 | || ||||||||| || || || | | |||| |||||| |||||| |||| || | Sbjct 172926 ACGCAGCTCGTAAAGGTATTTCCAAGTTTACAGTCATTGATGTATATGGTGAAAAGTCAT 172867 Query 145082 CAGAAGCGGCTAGTGAAATTCAAAAAAC-ATTTGCTGAAGATATGAAGAAATATGGTTTT 145140 | ||||| | |||| | || || ||| ||| |||| ||| | || | | || ||| Sbjct 172866 CCGAAGCAG-GAGTGGACGTCCAACAACGTTTTTCTGATGATGTTAAAGAGTTAGGCTTT 172808 Query 145141 ATTATTGATGATCTTACTTTAGGTGTGCCAAAGCCAGAT--AAAGCTACTCAAGATGCAA 145198 ||| | | |||| ||||||| || | || ||| ||| ||||| || |||| Sbjct 172807 ATTGTATCCAACGTTACCGTAGGTGTTCCTCAACCTGATGCCAAG--ACTCAGGAAGCAA 172750 Query 145199 TTGATGCTAGAGTTAAATCTTCTCAGGAATTAGAACGTTCTCAAACTGAAATCAAGATTG 145258 | ||| | || || ||||||| ||| | |||||| |||||| | |||| | Sbjct 172749 TCGATAAGCGTGTCGAAGCTTCTCAAGAACTGGAACGTAAAACGACTGAACTTGAGATCG 172690 Query 145259 CTAAAGCAGATGCTGAGAGGAAGAAAATTGAAGCTCAAGGTGTTGCAGA 145307 | || ||| || || | ||| | ||||| |||||| |||||| Sbjct 172689 CCAAGAAAGAAGCAGATCGTAAGCGTGTGGAAGCGCAAGGTAATGCAGA 172641 >seq2 Length=712559 Score = 183 bits (202), Expect = 5e-41 Identities = 1016/1593 (64%), Gaps = 66/1593 (4%) Strand=Plus/Minus Query 190894 ATCACTATTGACAAATAAAGTAGTAGAAATACCCTGATCAATATGTTGTTGGATTACTGC 190953 |||||| || ||| | | | || || || || || || | ||| | || || | || Sbjct 469566 ATCACTGTTTACATGAAGAATTGTGGAGATTCCTTGGTCCACATGCGGCTGAATCTCCGC 469507 Query 190954 AACCATGTCAATAATTTTATTTTGATCCATATCATATGCTGATTTGTAAGACCATTGAGT 191013 || || ||||| | ||| ||||||||| | ||| || ||||||||| | | | | Sbjct 469506 AATCAAATCAATCACTTTGAATTGATCCATCTGATACGCAGATTTGTAATAGAAGACA-T 469448 Query 191014 TCTACCGTCT--AGATATGGCATTGGATAGTATGTTGTAGAGTCATGATATGTTCTGTTT 191071 | | || | | | ||| ||||| ||||| || || || || | ||| |||| | Sbjct 469447 TAT-CCTTTTGCAAATAGGGCATCGGATAATACGTGGTTGAATTGGCATAGGTTCGTGTC 469389 Query 191072 TCAATTCGACTTACAACTGGCATAATAGATTGA-GTTGAATTCTGTACATAACTAATTGA 191130 |||||| | ||||| ||||| | | | || |||| ||| || | |||| || | Sbjct 469388 TCAATTTGTTCTACAATGGGCATTACAC-TGGATGTTGCATTTTGGATATAAGAGAT-GC 469331 Query 191131 CTG-TGTAGGTGCAATAGCAAGTCTATAAGCATGGTATAAACCATTTTCTTTTACTTG-- 191187 || ||| || |||||||| | | ||| ||||| || | |||||||| | |||| Sbjct 469330 TTGCTGTTGGAGCAATAGCCATGCGATAGGCATGATAGAGGCCATTTTCCATCACTTTAG 469271 Query 191188 --TTCTGCTAATTCAGCCCAATCTTCTTTTGTTGGAACAAAGATTCCCTCAAATAATTCT 191245 || ||| ||| ||||| || | |||||| ||||| | ||| |||||| Sbjct 469270 ATTTAAGCTGTTTC----CAATCATCGGGCGAAGGAACATCAATTCCGTTAAACAATTCT 469215 Query 191246 TTTACTTTTTGACTTCTAGGTGTATAATCATTTTCGATATAACGTTTAAAATAATTACCA 191305 | |||||| | | | || ||||| | | |||||| | |||||| |||| Sbjct 469214 TGTACTTTCGAAGTGTTGGGACGGTAATCCGTGGTCACATAACGATCAAAATATACACCA 469155 Query 191306 TTAGCATATTCAGAATCTTCAAAACGATGGAAttttttatttttCTCAATAGCAATTTCC 191365 | ||||| || || || ||||| | |||||| || | | || |||| ||| Sbjct 469154 GTTGCATAGTCGGACTCCTCAAATCCATGGAACCGTTGGCCGGTTTGCATTGCAAACTCC 469095 Query 191366 ATACTTCGTCTA-ATACTATGGAAATTCATAATTGCAAAGAA--TACATTGGCAAAATCT 191422 |||||| ||| | ||| ||||||| | |||||| ||| | ||||||| Sbjct 469094 ATACTTT-TCTCCAGGGAATGATAATTCATGGTCATAAAGAAGGTACGTA--CAAAATCC 469038 Query 191423 CTAGCTACAGCACTTTCATATGAAATACTATTTTTAGCAAGGAAACCATGTAAGTTCATT 191482 | ||| | | || ||||| | ||| || || || || | |||| || | ||||| Sbjct 469037 TTGGCTTCCGAGCTCTCATAAGCAATCCTGTTCTTGGCTAAATAACCGTGCAGATTCATG 468978 Query 191483 GCGCCTAAACCAACTGAATGGAATAGAGCATTTGCTTTTCTTATAGATGGTGCATTTTTG 191542 || || |||||||| ||||| | | | || ||||| || | ||| ||||| Sbjct 468977 GCACCCAAACCAACGGAATGCATTTCGGAGTTGGCTTTGGCTACACCTGGAGCATTGGCA 468918 Query 191543 ATATCACTCTTATCTGTTACAGATGTTAAAATATCCATTGCAATATCTACAGAATCTTTA 191602 | || || | || | ||||| || | |||| | || || || || || Sbjct 468917 ACATGCGTCATGTCGCTGACAGAGGTCAGCGCGATCATTCCCTCATGAACGGATTCCTTG 468858 Query 191603 AATTTTTTAGTCTCCATTACATTAACGATATTTAATGATGCAAGGTTACAACTGATTCCC 191662 | || ||||||| |||||||| ||||| | || || ||||| || ||||| | Sbjct 468857 ATCTTGCCGCTCTCCATAACATTAACAATATTGAGGGAGGCCAGGTTGCAGCTGATATCT 468798 Query 191663 AATCC--TAATTCATCTTCTTCTCCATAATTATTAATTACTGA----TACTGAACTTAAC 191716 | |||| ||| || ||||| | ||||| | || | ||||| || Sbjct 468797 TTGCGGATAAT--ATCCGGTTGACCATAGTCCGTAATTTCAGAAGTCTCCTGAAGTT--- 468743 Query 191717 TGCATAATTTCAGTACAAAGGTTAGAGAATTTAATTTCACCAATTGCTTTTAAAGCATGT 191776 | | || || || || ||||| || | ||| | || || | |||||| |||||| Sbjct 468742 -GGAAGATCTCTGTGCAGAGGTTGGACATTTTGACTTGTCCTACGTTTTTTAAGGCATGT 468684 Query 191777 TCTTTATTAGCATTTGTTTTGAAGAACAGATAAGGGTATCCTGATTCTAATTGAGTCATT 191836 ||| ||||||||| ||||| | | ||| || || || ||||| | |||| |||| Sbjct 468683 GCTTGATTAGCATTGGTTTTATTAATGATATAGGGATAGCCGGATTCAAGTTGAATCATC 468624 Query 191837 GCAATTTGATTCATTAGTTTCATTGGTGATAATTCAC-ATACAAATTTCTTAATATTTGG 191895 || |||| ||| | | | || | || || || ||||| | | Sbjct 468623 GCTATTTTGGTCAGCATATCCCGTGC----ACTTAACGATTTTTTCTTCTTCACACGGTC 468568 Query 191896 ATTATTAACTAATTCATCATACATTACATCTAAATCCATCTCATCTAAAGGAATTCCATA 191955 | | | || ||||||||| ||||| | |||||| ||||| ||| | ||||||| Sbjct 468567 GTCAGCGAGCAACGTATCATACATCACATCCAGATCCATATCATCCAAATGTGTTCCATA 468508 Query 191956 TTCTTTTTCGACACTATAAGGAGAGAAT--GTATAGAACTCTTCTTCTCCTGATTCTAGC 192013 |||| | |||||||||||| | ||| ||| | || || || || ||| || Sbjct 468507 CGCTTTATAGACACTATAAGGTGCGAAGAGGTACA-AAGGCTCATTATCTTGA-----GC 468454 Query 192014 AATTGAATA-AATTTATCAGGAACAATAATTCCAGTTGAAAGTGTTTTCATACGAATGCT 192072 | | ||| || || ||||||||||| || | || || ||||| | || || | Sbjct 468453 CAGTTTATAGAAACGATTAGGAACAATAAGCCCGATAGAGAGAGTTTTTAGTCGGATTTT 468394 Query 192073 ATCGTCAGCATTGAtttttttAGTATTTAGGAAATGAATAATATCCCCATGAAAAATATT 192132 || || |||||||| ||||| ||| || | | |||| |||| | ||||||||| Sbjct 468393 CTCATCCGCATTGATCTTTTTGCTATCCAGCAGTTCCATAACGTCCCAACCAAAAATATT 468334 Query 192133 AAGATAAACAGCTCCTGAGCCTTTGCGTTGACCCATCTGATCAGCATAAGAGAAACTTTG 192192 | || |||| || || ||||| ||||||||||||||||| || || ||||||| | Sbjct 468333 ATAGTATGCAGCACCAGAACCTTTCCGTTGACCCATCTGATCGGCGTAGGAGAAACCATC 468274 Query 192193 TTCCAATAATTTCATTACAGGAATAACACCTTTAGCGGCATTTTCTTCACCATTTACTG- 192251 |||| | || | ||||| ||| |||||||| || ||| |||| |||| || Sbjct 468273 CTCCATCAGCTTGAGAACAGGCGTAATGCCTTTAGCAGCCCCTTCGACACC-TTTAATGA 468215 Query 192252 GATCTCCA--AGCATTCTTAATTTAGAAACATTTGTTGA-AACCCCTCCACCA---ATTT 192305 |||||| |||| | || || || | ||||| | || |||||||| |||| Sbjct 468214 CTTCTCCACGAGCA--CGCAACTTCGACA----GGTTGACAGCCACTCCACCACCGATTT 468161 Query 192306 TAGAGAGATACTTTGATTGTCCTTCA--ATATGACTAATTGAGTTTAGAGTATCATCAAC 192363 | || | | | | | || |||| | || | || ||||| || | |||||| | Sbjct 468160 TGGATAACTGCATACA-AGT-GTTCAGTACATAGTTTATGGAGTTCAGTGAATCATCCAT 468103 Query 192364 TTCATCTAAGAAACAAGATACAAGTTCCCCTCTTCTTGCTTTACCAGCATTAAGGAAAGT 192423 |||| | ||| ||||| || ||||| || | | ||| |||||||| || ||||| Sbjct 468102 TTCAAGCAGGAAGCAAGAAACCAGTTCACCGCGCCGACTTTTTCCAGCATTCAGAAAAGT 468043 Query 192424 AGGAGTAGCAGGTTGAACTCTTTGTTCTATCAT 192456 || || || ||||||| | || || ||||| Sbjct 468042 GGGGGTCGCGGGTTGAAGACGCTGCTCCATCAT 468010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 803160697555840