Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq16 82.4 8e-11 >seq16 Length=148473 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 4874 CTCGAACTTCGGACACCCGGATTAAAAGTCCGGTGCTCTAACCAACTGAGCTAGT-ATCC 4932 ||||||| | ||||||| ||||||||||| |||||||| ||||||||||||| | | | Sbjct 116 CTCGAACCTTCGACACCCTGATTAAAAGTCAGGTGCTCT-ACCAACTGAGCTAATGACTC 58 Query 4933 CTAAATTTGGTGGGGAGTAATGGAGTCGAACCAC 4966 |||| |||||| | | ||||| ||||||||| Sbjct 57 GTAAAACTGGTGGAGGATGATGGATTCGAACCAC 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539866879826560